Motif IL_29904.1 Version IL_29904.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-5 | 1-11 | 2-10 | 4-10 | 5-9 | 5-11 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5DCV_008 | 5DCV | 0.2731 | 1 | Kink-turn | D | RNA (47-MER) | C | 18 | G | 19 | G | 20 | G | 22 | A | 23 | A | 24 | G | 25 | * | C | 32 | G | 33 | A | 34 | G | 35 | ncsS | cWW | tsS | tSH | tSs | cWW | |
| 2 | IL_5XTM_003 | 5XTM | 0.0000 | 1 | Kink-turn | B | RNA (47-MER) | C | 16 | G | 17 | G | 18 | G | 20 | A | 21 | A | 22 | G | 23 | * | C | 30 | G | 31 | A | 32 | G | 33 | cWW | tsS | tSH | tHS | cWW | ||
| 3 | IL_5XTM_007 | 5XTM | 0.0948 | 1 | Kink-turn | D | RNA (47-MER) | C | 16 | G | 17 | G | 18 | G | 20 | A | 21 | A | 22 | G | 23 | * | C | 30 | G | 31 | A | 32 | G | 33 | cWW | tsS | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGUGAAG*CGAG | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUGAA*GA | 3 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn (3)
- Basepair signature
- cWW-tSS-tSH-L-tHS-cWW-L
- Heat map statistics
- Min 0.09 | Avg 0.16 | Max 0.33
Coloring options: