Motif IL_29978.1 Version IL_29978.1 of this group appears in releases 3.2 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9	1-9	2-8	5-8	6-7
1	IL_4V5O_126	4V5O	0.4436	0	Other IL (H)	BA	SSU rRNA	G	963	G	964	G	965	A	966	U	967	C	968	*	G	992	U	993	C	994	cWW		ncWw	cWW
2	IL_5J7L_304	5J7L	0.0000	0		DA	LSU rRNA	G	1651	A	1652	G	1653	A	1654	A	1655	C	1656	*	G	2004	A	2005	C	2006	cWW		tHS	cWW
3	IL_4IOA_062	4IOA	0.0496	0		X	LSU rRNA	G	1668	A	1669	G	1670	A	1671	A	1672	C	1673	*	G	1987	A	1988	C	1989	cWW		tHS	cWW
4	IL_4Y4O_240	4Y4O	0.0709	0		2A	LSU rRNA	G	1651	A	1652	G	1653	A	1654	A	1655	C	1656	*	G	2004	A	2005	C	2006	cWW		tHS	cWW
5	IL_4WF9_062	4WF9	0.1631	0		X	LSU rRNA	G	1695	C	1696	G	1697	A	1698	A	1699	C	1700	*	G	2031	A	2032	C	2033	cWW		tHS	cWW
6	IL_4V9F_059	4V9F	0.2325	1		0	LSU rRNA	G	1728	A	1729	C	1731	A	1732	A	1733	C	1734	*	G	2045	G	2046	C	2047	cWW	ncWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAGAAC*GAC	3
GGGAUC*GUC	1
GCGAAC*GAC	1
GAGCAAC*GGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGAA*A	3
GGAU*U	1
CGAA*A	1
AGCAA*G	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.2	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-09-26	2018-10-19
Status	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Other IL (H) (1)
Basepair signature: cWW-L-L-L-tHS-cWW
Heat map statistics: Min 0.05 | Avg 0.22 | Max 0.53

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