Motif IL_30659.1 Version IL_30659.1 of this group appears in releases 3.88 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7	1-2	1-7	2-7	3-5	3-6	4-5
1	IL_4N0T_004	4N0T	0.3066	0		B	U6 snRNA	G	78	A	79	U	80	G	81	*	C	66	C	67	C	68		cWW		ncWW	cWW	cWW
2	IL_4V9F_053	4V9F	0.1688	0		0	LSU rRNA	G	1475	A	1476	C	1477	U	1478	*	A	1465	C	1466	C	1467		cWW			cBW	cWW
3	IL_4P3T_002	4P3T	0.0000	0		B+A	RNA (23-mer)	G	39	A	40	A	41	G	42	*	C	7	C	8	C	9		cWW			ncWW	cWW
4	IL_8VTW_030	8VTW	0.3015	0	Minor groove platform with extra cWW (H)	1A	LSU rRNA	A	899	A	900	A	901	C	902	*	G	875	C	876	U	877		cWW	tHS		ncWW	cWW
5	IL_4LFB_066	4LFB	0.5539	2		A	SSU rRNA	C	1128	G	1131	C	1132	G	1133	*	C	1141	G	1142	G	1143		cWW	ncWS		ncWW	cWW
6	IL_8C3A_432	8C3A	0.5306	1		CM	SSU rRNA	U	778	A	780	G	781	C	782	*	G	736	A	737	A	738	ncSH	ncWW			cWW	cWW
7	IL_5J7L_006	5J7L	0.4293	0	Minor groove platform with extra cWW	AA	SSU rRNA	C	99	G	100	A	101	G	102	*	C	67	G	68	G	69		cWW	tHS		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUG*CCC	1
GACU*ACC	1
GAAG*CCC	1
AAAC*GCU	1
CCAGCG*CGG	1
UUAGC*GAA	1
CGAG*CGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*C	2
AU*C	1
AC*C	1
CAGC*G	1
UAG*A	1
GA*G	1

Release history

Release	3.88
Date	2024-09-11
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Minor groove platform with extra cWW (1)
Minor groove platform with extra cWW (H) (1)
Basepair signature: cWW-L-cWW-cWW
Heat map statistics: Min 0.17 | Avg 0.39 | Max 0.71

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