Motif IL_30659.1 Version IL_30659.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-2 | 1-7 | 2-7 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4N0T_004 | 4N0T | 0.3066 | 0 | B | U6 snRNA | G | 78 | A | 79 | U | 80 | G | 81 | * | C | 66 | C | 67 | C | 68 | cWW | ncWW | cWW | cWW | |||
| 2 | IL_4V9F_053 | 4V9F | 0.1688 | 0 | 0 | LSU rRNA | G | 1475 | A | 1476 | C | 1477 | U | 1478 | * | A | 1465 | C | 1466 | C | 1467 | cWW | cBW | cWW | ||||
| 3 | IL_4P3T_002 | 4P3T | 0.0000 | 0 | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | C | 8 | C | 9 | cWW | ncWW | cWW | ||||
| 4 | IL_8VTW_030 | 8VTW | 0.3015 | 0 | Minor groove platform with extra cWW (H) | 1A | LSU rRNA | A | 899 | A | 900 | A | 901 | C | 902 | * | G | 875 | C | 876 | U | 877 | cWW | tHS | ncWW | cWW | ||
| 5 | IL_4LFB_066 | 4LFB | 0.5539 | 2 | A | SSU rRNA | C | 1128 | G | 1131 | C | 1132 | G | 1133 | * | C | 1141 | G | 1142 | G | 1143 | cWW | ncWS | ncWW | cWW | |||
| 6 | IL_8C3A_432 | 8C3A | 0.5306 | 1 | CM | SSU rRNA | U | 778 | A | 780 | G | 781 | C | 782 | * | G | 736 | A | 737 | A | 738 | ncSH | ncWW | cWW | cWW | |||
| 7 | IL_5J7L_006 | 5J7L | 0.4293 | 0 | Minor groove platform with extra cWW | AA | SSU rRNA | C | 99 | G | 100 | A | 101 | G | 102 | * | C | 67 | G | 68 | G | 69 | cWW | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUG*CCC | 1 |
| GACU*ACC | 1 |
| GAAG*CCC | 1 |
| AAAC*GCU | 1 |
| CCAGCG*CGG | 1 |
| UUAGC*GAA | 1 |
| CGAG*CGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*C | 2 |
| AU*C | 1 |
| AC*C | 1 |
| CAGC*G | 1 |
| UAG*A | 1 |
| GA*G | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Minor groove platform with extra cWW (1)
- Minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.17 | Avg 0.39 | Max 0.71
Coloring options: