Motif IL_30840.1 Version IL_30840.1 of this group appears in releases 0.6 to 1.4

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11	1-11	2-10	3-10	4-7	4-9	5-8	6-7
1	IL_4A1B_014	4A1B	0.9191	1	1	26S RRNA	G	430	A	431	G	432	A	434	A	435	U	436	*	A	646	U	647	G	648	G	649	C	650	cWW	ncWW		ntSH		ncWW	cWW
2	IL_2XZM_010	2XZM	0.0000	0	A	18S RRNA	U	113	U	114	A	115	U	116	U	117	U	118	*	A	286	U	287	C	288	U	289	A	290	cWW	cwW				cWw	cWW
3	IL_3U5F_010	3U5F	0.2798	0	6	18S rRNA	U	117	U	118	A	119	U	120	U	121	U	122	*	A	295	U	296	U	297	C	298	A	299	cWW		ntHS		cWw	cWw	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAGCAAU*AUGGC	1
UUAUUU*AUCUA	1
UUAUUU*AUUCA	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGCAA*UGG	1
UAUU*UCU	1
UAUU*UUC	1

Release history

Release	0.6	0.7	0.8	0.9	0.10	0.11	0.12	1.0	1.1	1.2	1.3	1.4
Date	2012-04-02	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-08	2013-05-04	2013-06-01	2013-07-01
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_30840.1	Only in the parent motif
IL_02980.1 Compare	IL_2XZM_010	IL_3U5F_010, IL_4A1B_014

Children motifs

Child motif	Common motif instances	Only in IL_30840.1	Only in the child motif
IL_30840.2 Compare	IL_3U5F_010, IL_4A1B_014	IL_2XZM_010	IL_4BPP_010

Annotations: (3)
Basepair signature: cWW-cWW-L-cWW-cWW-cWW
Heat map statistics: Min 0.28 | Avg 0.47 | Max 0.94

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