Motif IL_31196.1 Version IL_31196.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4PCJ_004 | 4PCJ | 0.1467 | 0 | Major groove intercalation | A | trCUG-3('5) | A | 11 | G | 12 | * | U | 25 | A | 26 | U | 27 | cWW | cWW |
| 2 | IL_1U6B_010 | 1U6B | 0.0000 | 0 | Major groove intercalation | B | 197-MER | A | 150 | G | 151 | * | U | 160 | A | 161 | U | 162 | cWW | cWW |
| 3 | IL_5DCV_005 | 5DCV | 0.1118 | 0 | Major groove intercalation | D | RNA (47-MER) | A | 48 | G | 49 | * | U | 3 | A | 4 | U | 5 | cWW | cWW |
| 4 | IL_5J7L_268 | 5J7L | 0.7328 | 1 | Stack outside cWW | DA | LSU rRNA | U | 847||A | C | 848 | * | G | 930 | U | 932 | A | 933 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAU | 3 |
| GUUA*UC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 3 |
| UU* | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove intercalation (3)
- Stack outside cWW (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.34 | Max 0.82
Coloring options: