#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 111-115-107-108-9
1 IL_1ET4_0011ET40.00000Vitamin B12 AptamerARNA APTAMER, 35-MERC211G212C213A214U215A216A217C218*G228C229G230cWWncWWncWWcWW
2 IL_1ET4_0031ET40.09430 BRNA APTAMER, 35-MERC311G312C313A314U315A316A317C318*G328C329G330cWWncWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGCAUAAC*GCG2
Non-Watson-Crick part of the motif
SequenceCounts
GCAUAA*C2

Release history

Release0.70.80.90.100.110.121.01.11.21.31.41.51.61.71.81.91.101.111.121.131.141.151.171.18
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-042013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-272014-06-202014-09-042014-10-07
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_31707.1Only in the parent motif
IL_24476.1
Compare
IL_1ET4_003, IL_1ET4_001IL_1ET4_007, IL_1ET4_005, IL_1ET4_009

Children motifs

This motif has no children motifs.
Annotations
  • Vitamin B12 Aptamer (1)
  • Basepair signature
    cWW-L-L-L-cWW-L-bif-cWW
    Heat map statistics
    Min 0.09 | Avg 0.05 | Max 0.09
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