Motif IL_31707.1 Version IL_31707.1 of this group appears in releases 0.7 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 1-11 | 5-10 | 8-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1ET4_001 | 1ET4 | 0.0000 | 0 | Vitamin B12 Aptamer | A | RNA APTAMER, 35-MER | C | 211 | G | 212 | C | 213 | A | 214 | U | 215 | A | 216 | A | 217 | C | 218 | * | G | 228 | C | 229 | G | 230 | cWW | cWW | cWW |
| 2 | IL_1ET4_003 | 1ET4 | 0.0943 | 0 | B | RNA APTAMER, 35-MER | C | 311 | G | 312 | C | 313 | A | 314 | U | 315 | A | 316 | A | 317 | C | 318 | * | G | 328 | C | 329 | G | 330 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAUAAC*GCG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAUAA*C | 2 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_31707.1 | Only in the parent motif |
|---|---|---|---|
| IL_24476.1 Compare | IL_1ET4_003, IL_1ET4_001 | IL_1ET4_007, IL_1ET4_005, IL_1ET4_009 |
Children motifs
This motif has no children motifs.- Annotations
-
- Vitamin B12 Aptamer (1)
- Basepair signature
- cWW-L-L-L-cWW-L-bif-cWW
- Heat map statistics
- Min 0.09 | Avg 0.05 | Max 0.09
Coloring options: