Motif IL_31836.1 Version IL_31836.1 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_267 | 5J7L | 0.7908 | 1 | Other IL | DA | LSU rRNA | A | 844 | A | 845||A | U | 847||A | * | A | 933 | U | 934 | cWW | cWW | |
| 2 | IL_4UYK_002 | 4UYK | 0.4690 | 0 | Not an internal loop | R | SRP RNA | G | 78 | C | 79 | G | 80 | * | C | 121 | C | 122 | ncwW | cWW | |
| 3 | IL_5TBW_101 | 5TBW | 0.4882 | 1 | Single stack bend with bulge | 1 | LSU rRNA | G | 2770 | U | 2771 | C | 2773 | * | G | 2787 | C | 2788 | cWW | cWW | |
| 4 | IL_7RQB_058 | 7RQB | 0.4497 | 0 | Single stack bend | 1A | LSU rRNA | G | 1448 | A | 1449 | G | 1450 | * | C | 1462 | C | 1463 | cWW | cWW | |
| 5 | IL_4LFB_053 | 4LFB | 0.0000 | 0 | Not an internal loop | A | SSU rRNA | G | 1274 | A | 1275 | G | 1276 | * | C | 1259 | C | 1260 | ncWW | ntHS | cWW |
| 6 | IL_7A0S_066 | 7A0S | 0.5082 | 1 | Minor groove platform, major groove intercalation | X | LSU rRNA | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | cWW | |
| 7 | IL_4V9F_066 | 4V9F | 0.5747 | 1 | Minor groove platform, major groove intercalation | 0 | LSU rRNA | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | |
| 8 | IL_7RQB_071 | 7RQB | 0.6071 | 1 | Minor groove platform, major groove intercalation | 1A | LSU rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*CC | 2 |
| CCGG*CG | 2 |
| AU*AAUU | 1 |
| GCG*CC | 1 |
| GUCC*GC | 1 |
| CCAG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 2 |
| CG* | 2 |
| *AU | 1 |
| C* | 1 |
| UC* | 1 |
| CA* | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform, major groove intercalation (3)
- Not an internal loop (2)
- Other IL (1)
- Single stack bend with bulge (1)
- Single stack bend (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.14 | Avg 0.55 | Max 0.99
Coloring options: