Motif IL_31933.2 Version IL_31933.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3LOA_003 | 3LOA | 0.9419 | 1 | Decoding loop with one bulged A | B+A | RNA (23-mer) | G | 1491 | A | 1493 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
| 2 | IL_3Q1Q_006 | 3Q1Q | 0.9545 | 1 | B | RNase P RNA | G | 198 | G | 199 | U | 201 | * | A | 179 | G | 180 | C | 181 | cWW | ncBW | cWW | |
| 3 | IL_4V5O_141 | 4V5O | 0.7804 | 0 | BA | SSU rRNA | A | 1206 | C | 1207 | A | 1208 | * | U | 1221 | U | 1222 | U | 1223 | cWW | ntHS | cWW | |
| 4 | IL_4V8P_237 | 4V8P | 0.1444 | 0 | Isolated tWW turn (H) | D1 | LSU rRNA | A | 1919 | A | 1920 | G | 1921 | * | C | 2333 | C | 2334 | U | 2335 | cWW | tWW | cWW |
| 5 | IL_5TBW_075 | 5TBW | 0.0000 | 0 | Isolated tWW turn | 1 | LSU rRNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW |
| 6 | IL_4V9F_060 | 4V9F | 0.1048 | 0 | Isolated tWW turn | 0 | LSU rRNA | U | 1741 | A | 1742 | G | 1743 | * | C | 2036 | C | 2037 | A | 2038 | cWW | tWW | cWW |
| 7 | IL_4WF9_063 | 4WF9 | 0.1764 | 0 | Isolated tWW turn | X | LSU rRNA | U | 1707 | A | 1708 | A | 1709 | * | U | 2022 | C | 2023 | A | 2024 | cWW | tWW | cWW |
| 8 | IL_5J7L_305 | 5J7L | 0.1641 | 0 | Isolated tWW turn | DA | LSU rRNA | G | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | C | 1997 | cWW | tWW | cWW |
| 9 | IL_4Y4O_232 | 4Y4O | 0.7540 | 1 | Isolated tWW turn (H) | 2A | LSU rRNA | U | 1433 | A | 1434 | G | 1435 | * | C | 1557 | A | 1558 | G | 1560 | cWW | tWW | cWW |
| 10 | IL_3MOJ_002 | 3MOJ | 0.7939 | 0 | A | LSU rRNA | G | 2569 | G | 2570 | U | 2571 | * | A | 2513 | U | 2514 | C | 2515 | cWW | ncWWa | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAG*CCU | 2 |
| GAAG*CAC | 1 |
| GGCU*AGC | 1 |
| ACA*UUU | 1 |
| UAG*CCA | 1 |
| UAA*UCA | 1 |
| GAA*UCC | 1 |
| UAG*CAGG | 1 |
| GGU*AUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*C | 5 |
| AA*A | 1 |
| GC*G | 1 |
| C*U | 1 |
| A*AG | 1 |
| G*U | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated tWW turn (4)
- (3)
- Isolated tWW turn (H) (2)
- Decoding loop with one bulged A (1)
- Basepair signature
- cWW-tWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.62 | Max 1.00
Coloring options: