Motif IL_32705.1 Version IL_32705.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V5O_111 | 4V5O | 0.0000 | 2 | Kink-turn related (H) | BA | SSU rRNA | G | 556 | U | 557 | G | 558 | C | 559 | C | 560 | A | 561 | G | 562 | * | C | 569 | G | 570 | G | 571 | U | 572 | A | 574 | U | 576 | C | 577 | cWW | cSW | tHS | ntWW | cWW | |
| 2 | IL_4V88_415 | 4V88 | 0.2703 | 2 | Kink-turn related | A6 | SSU rRNA | G | 562 | U | 563 | G | 564 | C | 565 | C | 566 | A | 567 | G | 568 | * | C | 575 | G | 576 | G | 577 | U | 578 | A | 580 | U | 582 | C | 583 | cWW | cSW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGCCAG*CGGUAAUUC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCCA*GGUAAUU | 2 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn related (H) (1)
- Kink-turn related (1)
- Basepair signature
- cWW-R-tWH-cSW-L-R-R-L-tHS-cWW
- Heat map statistics
- Min 0.27 | Avg 0.14 | Max 0.27
Coloring options: