Motif IL_33104.1 Version IL_33104.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8AF0_004 | 8AF0 | 0.3694 | 0 | C+D | RNA (19-mer) | A | 37 | C | 38 | G | 39 | * | C | 31 | C | 32 | U | 33 | ncWW | cWW | ||
| 2 | IL_7Y2B_002 | 7Y2B | 0.4339 | 0 | S | RNA (13-mer) | C | 6 | U | 7 | G | 8 | * | C | 6||||5_555 | U | 7||||5_555 | G | 8||||5_555 | cWW | cWW | ||
| 3 | IL_2ZI0_001 | 2ZI0 | 0.3590 | 0 | Isolated near basepair | D+C | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW | |
| 4 | IL_7A0S_030 | 7A0S | 0.2644 | 0 | Isolated near basepair | X | LSU rRNA | A | 883 | C | 884 | A | 885 | * | U | 917 | A | 918 | U | 919 | cWW | cWW | |
| 5 | IL_7VFT_001 | 7VFT | 0.0000 | 0 | A | RNA (23-mer) | C | 5||||12_555 | A | 6||||12_555 | G | 7||||12_555 | * | C | 17 | A | 18 | G | 19 | cWW | cWW | ||
| 6 | IL_7VFT_005 | 7VFT | 0.0002 | 0 | A | RNA (23-mer) | C | 5 | A | 6 | G | 7 | * | C | 17||||12_555 | A | 18||||12_555 | G | 19||||12_555 | cWW | cWW | ||
| 7 | IL_4ERD_003 | 4ERD | 0.7902 | 2 | D+C | RNA (22-mer) | U | 119 | C | 120 | C | 123 | * | G | 146 | G | 147 | A | 148 | cWW | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CAG | 2 |
| ACG*CCU | 1 |
| CUG*CUG | 1 |
| UUA*UUA | 1 |
| ACA*UAU | 1 |
| UCGAC*GGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*U | 2 |
| A*A | 2 |
| C*C | 1 |
| C*A | 1 |
| CGA*G | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Isolated near basepair (2)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.00 | Avg 0.39 | Max 0.89
Coloring options: