Motif IL_33144.1 Version IL_33144.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_045 | 2QBG | 0.6031 | 1 | B | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW | |
| 2 | IL_3PYO_029 | 3PYO | 0.5830 | 0 | A | U | 905 | G | 906 | U | 907 | * | A | 870 | U | 871 | A | 872 | cWW | ncWS | cWW | |
| 3 | IL_2ZJR_041 | 2ZJR | 0.2974 | 1 | Isolated cWS basepair (H) | X | C | 1210 | G | 1211 | U | 1212 | * | A | 1260 | U | 1262 | G | 1263 | cWW | cWS | cWW |
| 4 | IL_1S72_046 | 1S72 | 0.0000 | 1 | Isolated cWS basepair (H) | 0 | C | 1301 | G | 1302 | C | 1303 | * | G | 1351 | C | 1353 | G | 1354 | cWW | cWS | cWW |
| 5 | IL_2AW7_049 | 2AW7 | 0.1831 | 2 | A | U | 1052 | A | 1055 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | cWW | ||
| 6 | IL_1FJG_041 | 1FJG | 0.2222 | 2 | Isolated cWS basepair (H) | A | U | 1052 | A | 1055 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGU*AGUG | 2 |
| UGCAU*AUG | 2 |
| UGU*AUA | 1 |
| CGC*GACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GU | 2 |
| GCA*U | 2 |
| G*U | 1 |
| G*AC | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_33144.1 | Only in the parent motif |
|---|---|---|---|
| IL_99336.1 Compare | IL_1S72_046, IL_2ZJR_041 | IL_2AW7_049, IL_1FJG_041, IL_3PYO_029, IL_2QBG_045 | IL_3F1H_029 |
| IL_98138.1 Compare | IL_1FJG_041 | IL_2AW7_049, IL_1S72_046, IL_2ZJR_041, IL_3PYO_029, IL_2QBG_045 |
Children motifs
| Child motif | Common motif instances | Only in IL_33144.1 | Only in the child motif |
|---|---|---|---|
| IL_40090.1 Compare | IL_2AW7_049, IL_1S72_046, IL_1FJG_041, IL_2ZJR_041, IL_2QBG_045 | IL_3PYO_029 | IL_3U5F_067, IL_3U5H_052, IL_3U5H_062, IL_3UXR_042, IL_3U5F_093, IL_3UXR_030, IL_1O9M_003 |
- Annotations
-
- Isolated cWS basepair (H) (3)
- (3)
- Basepair signature
- Heat map statistics
- Min 0.13 | Avg 0.36 | Max 0.62
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