Motif IL_99336.1 Version IL_99336.1 of this group appears in releases 0.2 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3F1H_029 | 3F1H | 0.3124 | 0 | A | 23S RRNA | U | 905 | G | 906 | U | 907 | * | A | 870 | U | 871 | A | 872 | cWW | ncWS | cWW | |
2 | IL_1S72_046 | 1S72 | 0.0000 | 1 | Isolated cWS basepair (H) | 0 | LSU rRNA | C | 1301 | G | 1302 | C | 1303 | * | G | 1351 | C | 1353 | G | 1354 | cWW | cWS | cWW |
3 | IL_2ZJR_041 | 2ZJR | 0.1831 | 1 | Isolated cWS basepair (H) | X | LSU rRNA | C | 1210 | G | 1211 | U | 1212 | * | A | 1260 | U | 1262 | G | 1263 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AUA*UGU | 1 |
CGC*GACG | 1 |
CGU*AGUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
U*G | 1 |
G*AC | 1 |
G*GU | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_99336.1 | Only in the parent motif |
---|---|---|---|
IL_51068.1 Compare | IL_1S72_046, IL_2ZJR_041, IL_3F1H_029 | IL_3F1H_024, IL_2ZI0_001 |
Children motifs
Child motif | Common motif instances | Only in IL_99336.1 | Only in the child motif |
---|---|---|---|
IL_33144.1 Compare | IL_1S72_046, IL_2ZJR_041 | IL_3F1H_029 | IL_2AW7_049, IL_1FJG_041, IL_3PYO_029, IL_2QBG_045 |
- Annotations
-
- Isolated cWS basepair (H) (2)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.18 | Avg 0.19 | Max 0.36
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