Motif IL_33662.2 Version IL_33662.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-4 | 1-13 | 2-6 | 3-9 | 3-12 | 6-8 | 6-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_077 | 4WF9 | 0.3458 | 3 | X | LSU rRNA | C | 1961 | G | 1962 | A | 1963 | A | 1964 | U | 1966 | U | 1967 | C | 1968 | C | 1969 | U | 1970 | G | 1972 | * | C | 1988 | C | 1989 | G | 1991 | cWW | ncSH | ncHW | ntSW | cWW | |||
| 2 | IL_5TBW_090 | 5TBW | 0.0000 | 3 | 1 | LSU rRNA | C | 2277 | C | 2278 | A | 2279 | A | 2280 | U | 2282 | G | 2283 | C | 2284 | C | 2285 | U | 2286 | G | 2288 | * | C | 2304 | G | 2305 | G | 2307 | cWW | cHW | ntSW | tHh | cWW | |||
| 3 | IL_4V8P_250 | 4V8P | 0.2954 | 3 | D1 | LSU rRNA | C | 2272 | C | 2273 | A | 2274 | A | 2275 | U | 2277 | G | 2278 | C | 2279 | C | 2280 | U | 2281 | G | 2283 | * | C | 2299 | G | 2300 | G | 2302 | ncSW | cWW | cHW | tSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAAUGCCUCG*CGCG | 2 |
| CGAAAUUCCUUG*CCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAUGCCUC*GC | 2 |
| GAAAUUCCUU*CC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-tSS-cHW-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.30 | Avg 0.22 | Max 0.35
Coloring options: