Motif IL_33662.2 Version IL_33662.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	break		11		12		13	1-4	1-13	2-6	3-9	3-12	6-8	6-12	10-11
1	IL_4WF9_077	4WF9	0.3458	3	X	LSU rRNA	C	1961	G	1962	A	1963	A	1964	U	1966	U	1967	C	1968	C	1969	U	1970	G	1972	*	C	1988	C	1989	G	1991		cWW	ncSH	ncHW		ntSW		cWW
2	IL_5TBW_090	5TBW	0.0000	3	1	LSU rRNA	C	2277	C	2278	A	2279	A	2280	U	2282	G	2283	C	2284	C	2285	U	2286	G	2288	*	C	2304	G	2305	G	2307		cWW		cHW		ntSW	tHh	cWW
3	IL_4V8P_250	4V8P	0.2954	3	D1	LSU rRNA	C	2272	C	2273	A	2274	A	2275	U	2277	G	2278	C	2279	C	2280	U	2281	G	2283	*	C	2299	G	2300	G	2302	ncSW	cWW		cHW	tSs			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCAAAUGCCUCG*CGCG	2
CGAAAUUCCUUG*CCCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAAAUGCCUC*GC	2
GAAAUUCCUU*CC	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-L-tSS-cHW-L-L-L-L-L-cWW
Heat map statistics: Min 0.30 | Avg 0.22 | Max 0.35

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