Motif IL_33842.2 Version IL_33842.2 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 3-5 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4M6D_014 | 4M6D | 0.1138 | 2 | Major groove minor groove platform with intercalation; mini C-loop | H | aptamer | G | 28 | U | 29 | U | 30 | A | 31 | C | 32 | * | G | 36 | C | 39 | cWW | ncSH | cWS | cWW | |
| 2 | IL_4M4O_005 | 4M4O | 0.0000 | 2 | Major groove minor groove platform with intercalation; mini C-loop | B | RNA (59-MER) | G | 28 | U | 29 | U | 30 | A | 31 | C | 32 | * | G | 36 | C | 39 | cWW | ncSH | cWS | cWW | |
| 3 | IL_3J9W_036 | 3J9W | 0.9761 | 1 | Minor groove platform (H) | AA | SSU rRNA | U | 1389 | U | 1390 | C | 1391 | C | 1392 | C | 1393 | * | G | 943 | A | 945 | ncSH | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAC*GUUC | 2 |
| UUCCC*GCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUA*UU | 2 |
| UCC*C | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove minor groove platform with intercalation; mini C-loop (2)
- Minor groove platform (H) (1)
- Basepair signature
- cWW-cSH-L-cWS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.46 | Max 0.98
Coloring options: