Motif IL_33842.2 Version IL_33842.2 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7	1-3	1-7	3-5	4-7	5-6
1	IL_4M6D_014	4M6D	0.1138	2	Major groove minor groove platform with intercalation; mini C-loop	H	aptamer	G	28	U	29	U	30	A	31	C	32	*	G	36	C	39		cWW	ncSH	cWS	cWW
2	IL_4M4O_005	4M4O	0.0000	2	Major groove minor groove platform with intercalation; mini C-loop	B	RNA (59-MER)	G	28	U	29	U	30	A	31	C	32	*	G	36	C	39		cWW	ncSH	cWS	cWW
3	IL_3J9W_036	3J9W	0.9761	1	Minor groove platform (H)	AA	SSU rRNA	U	1389	U	1390	C	1391	C	1392	C	1393	*	G	943	A	945	ncSH	cWW		cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUAC*GUUC	2
UUCCC*GCA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUA*UU	2
UCC*C	1

Release history

Release	2.0
Date	2017-04-24
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove minor groove platform with intercalation; mini C-loop (2)
Minor groove platform (H) (1)
Basepair signature: cWW-cSH-L-cWS-cWW
Heat map statistics: Min 0.11 | Avg 0.46 | Max 0.98

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Coloring options: Nucleotide numbers

Motif IL_33842.2 Version IL_33842.2 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_33842.2 Version IL_33842.2 of this group appears in releases 2.0 to 2.0

Download

Csv

Json