IL_3J9W_036

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

3J9W|1|AA|C|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33842.2

Basepair signature

cWW-cSH-L-cWS-cWW

Number of instances in this motif group

3

Unit IDs

3J9W|1|AA|G|943
3J9W|1|AA|C|944
3J9W|1|AA|A|945
*
3J9W|1|AA|U|1389
3J9W|1|AA|U|1390
3J9W|1|AA|C|1391
3J9W|1|AA|C|1392
3J9W|1|AA|C|1393

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein uS7

Chain AX

Transfer RNA; tRNA

Chain AY

mRNA