Motif IL_34907.1 Version IL_34907.1 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_069 | 7A0S | 0.7393 | 0 | UAA/GAN with extra pair | X | LSU rRNA | U | 1870 | G | 1871 | A | 1872 | A | 1873 | G | 1874 | * | U | 1843 | C | 1844 | A | 1845 | A | 1846 | G | 1847 | cWW | ntHS | cWW | |||
| 2 | IL_4Y4O_247 | 4Y4O | 0.6411 | 0 | UAA/GAN with extra pair (H) | 2A | LSU rRNA | U | 1851 | C | 1852 | A | 1853 | A | 1854 | G | 1855 | * | C | 1887 | G | 1888 | A | 1889 | A | 1890 | G | 1891 | cWW | tSH | tHS | cWW | ||
| 3 | IL_4WF9_073 | 4WF9 | 0.7340 | 0 | UAA/GAN with extra pair | X | LSU rRNA | U | 1878 | U | 1879 | A | 1880 | A | 1881 | G | 1882 | * | C | 1914 | G | 1915 | A | 1916 | A | 1917 | G | 1918 | cWW | ntSH | cWW | |||
| 4 | IL_5J7L_292 | 5J7L | 0.1382 | 0 | UAA/GAN | DA | LSU rRNA | C | 1351 | U | 1352 | A | 1353 | A | 1354 | G | 1355 | * | C | 1376 | G | 1377 | A | 1378 | U | 1379 | G | 1380 | cWW | tWH | ncWW | tHS | cWW | |
| 5 | IL_7A0S_048 | 7A0S | 0.1028 | 0 | UAA/GAN | X | LSU rRNA | C | 1364 | U | 1365 | A | 1366 | A | 1367 | G | 1368 | * | C | 1389 | G | 1390 | A | 1391 | U | 1392 | G | 1393 | cWW | tWH | ncWW | tHS | cWW | |
| 6 | IL_4WF9_051 | 4WF9 | 0.0000 | 0 | UAA/GAN | X | LSU rRNA | C | 1388 | U | 1389 | A | 1390 | A | 1391 | G | 1392 | * | C | 1413 | G | 1414 | A | 1415 | U | 1416 | G | 1417 | cWW | ntWH | tHS | cWW | ||
| 7 | IL_4Y4O_277 | 4Y4O | 0.6688 | 4 | tSH-tHS-tHW (H) | 2A | LSU rRNA | U | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | * | C | 2774 | A | 2775 | A | 2776 | A | 2778 | G | 2782 | cWW | tWH | tSH | tHS | cWW | |
| 8 | IL_4WF9_099 | 4WF9 | 0.6697 | 4 | tSH-tHS-tHW | X | LSU rRNA | U | 2663 | U | 2664 | G | 2665 | A | 2666 | G | 2667 | * | C | 2801 | A | 2802 | A | 2803 | A | 2805 | G | 2809 | cWW | tWH | tSH | tHS | cWW | |
| 9 | IL_7A0S_093 | 7A0S | 0.6933 | 4 | tSH-tHS-tHW | X | LSU rRNA | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | * | C | 2754 | A | 2755 | A | 2756 | A | 2758 | G | 2762 | cWW | tWH | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*CGAUG | 3 |
| UUGAG*CAAGAUGAG | 3 |
| UGAAG*UCAAG | 1 |
| UCAAG*CGAAG | 1 |
| UUAAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GAU | 3 |
| UGA*AAGAUGA | 3 |
| GAA*CAA | 1 |
| CAA*GAA | 1 |
| UAA*GAA | 1 |
- Annotations
-
- UAA/GAN (3)
- UAA/GAN with extra pair (2)
- tSH-tHS-tHW (2)
- UAA/GAN with extra pair (H) (1)
- tSH-tHS-tHW (H) (1)
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.56 | Max 0.98
Coloring options: