Motif IL_35049.1 Version IL_35049.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2OE8_002 | 2OE8 | 0.0324 | 1 | B+A | RNA (17-mer) | A | 1490 | A | 1492 | A | 1493 | G | 1494 | * | C | 1407 | G | 1408 | C | 1409 | U | 1410 | cWW | cSW | cWW | ||
| 2 | IL_2OE5_002 | 2OE5 | 0.0000 | 1 | B+A | RNA (17-mer) | A | 1490 | A | 1492 | A | 1493 | G | 1494 | * | C | 1407 | G | 1408 | C | 1409 | U | 1410 | cWW | cSW | cWW | ||
| 3 | IL_2FQN_003 | 2FQN | 0.0955 | 1 | A+B | RNA (23-mer) | A | 15 | A | 17 | A | 18 | G | 19 | * | C | 30 | G | 31 | C | 32 | U | 33 | cWW | cSW | cWW | ||
| 4 | IL_4V91_104 | 4V91 | 0.9078 | 9 | 1 | LSU rRNA | A | 2450 | U | 2451 | G | 2452 | G | 2462 | * | C | 2493 | C | 2494 | U | 2495 | U | 2496 | cWW | ncWW | cWW | ||
| 5 | IL_3J79_042 | 3J79 | 0.7658 | 0 | Tandem non-canonical cWW pairs (H) | A | LSU rRNA | A | 1128 | U | 1129 | U | 1130 | A | 1131 | * | U | 1164 | U | 1165 | C | 1166 | U | 1167 | cWW | ncSW | cWw | cWW |
| 6 | IL_4V9F_036 | 4V9F | 0.9620 | 0 | 0 | LSU rRNA | A | 965 | U | 966 | U | 967 | G | 968 | * | C | 1000 | U | 1001 | G | 1002 | U | 1003 | cWW | cSW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 3 |
| AUGCGUAGGAUAG*CCUU | 1 |
| AUUA*UUCU | 1 |
| AUUG*CUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 3 |
| UGCGUAGGAUA*CU | 1 |
| UU*UC | 1 |
| UU*UG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Tandem non-canonical cWW pairs (H) (1)
- Basepair signature
- cWW-cSW-L-R-cWW
- Heat map statistics
- Min 0.03 | Avg 0.53 | Max 0.96
Coloring options: