Motif IL_35350.1 Version IL_35350.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8VTW_024 | 8VTW | 0.4030 | 1 | 1A | LSU rRNA | G | 931 | A | 933 | G | 934 | * | C | 844 | G | 845 | C | 846 | cWW | cWW | |
| 2 | IL_8C3A_510 | 8C3A | 0.0000 | 1 | CM | SSU rRNA | G | 853 | A | 854 | C | 855 | * | G | 942 | U | 943 | U | 945 | ncWWa | cWW | |
| 3 | IL_406D_006 | 406D | 0.3805 | 0 | A+E | RNA (17-mer) | U | 8||D | G | 9||D | G | 10||D | * | U | 25||D | G | 26||D | G | 27||D | cWW | ncWH | ncWW |
| 4 | IL_4LCK_009 | 4LCK | 0.7813 | 8 | F | T-BOX RIBOSWITCH STEM I | G | 69 | G | 70 | A | 71 | * | U | 37 | G | 38 | C | 47 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CGC | 1 |
| GAC*GUUU | 1 |
| UGG*UGG | 1 |
| GGA*UGAUUAGCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*G | 1 |
| A*UU | 1 |
| G*G | 1 |
| G*GAUUAGCGA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.38 | Avg 0.47 | Max 0.80
Coloring options: