Motif IL_35422.1 Version IL_35422.1 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_087 | 4V9F | 0.4830 | 2 | Isolated non-canonical cWW pair | 0 | LSU rRNA | U | 2545 | U | 2546 | C | 2547 | * | G | 2609 | U | 2610 | G | 2613 | cWW | cWw | cWW |
| 2 | IL_5TBW_132 | 5TBW | 0.0000 | 3 | Isolated non-canonical cWW pair | 1 | LSU rRNA | G | 3328 | U | 3329 | A | 3330 | * | U | 3373 | U | 3374 | C | 3378 | cWW | cWw | cWW |
| 3 | IL_4V8P_287 | 4V8P | 0.1450 | 3 | D1 | LSU rRNA | G | 3286 | U | 3287 | A | 3288 | * | U | 3329 | U | 3330 | C | 3334 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUC*GUGAG | 1 |
| GUA*UUAAGC | 1 |
| GUA*UUCAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*UGA | 1 |
| U*UAAG | 1 |
| U*UCAG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (2)
- (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.15 | Avg 0.25 | Max 0.48
Coloring options: