#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 8 9 10 11 121-122-113-64-54-115-11
1 IL_1U63_0031U630.46590Kink-turnD49 NT FRAGMENT OF MRNA FOR L1G10G11A12G13*C33G34A35G36A37A38A39C40cWWtSHntSscWWtsS
2 IL_2VPL_0012VPL0.00000Kink-turnBFRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITEG10G11A12G13*C33G34A35G36A37A38A39C40cWWtSHntSscWWtsS
3 IL_2HW8_0012HW80.11310Kink-turnB36-MERG10G11A12G13*C22G23C24G25A26A27A28C29cWWtSHntSscWWtsSncsS

3D structures

Complete motif including flanking bases
SequenceCounts
GGAG*CGAGAAAC2
GGAG*CGCGAAAC1
Non-Watson-Crick part of the motif
SequenceCounts
GA*GAGAAA2
GA*GCGAAA1

Release history

Release3.33.43.53.63.73.83.93.103.23.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.76
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-09-262018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Kink-turn (3)
  • Basepair signature
    cWW-tSH-tSS-tSS-R-R-R-R-cWW
    Heat map statistics
    Min 0.11 | Avg 0.24 | Max 0.48
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.5854 s