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Motif IL_36516.3 Version IL_36516.3 of this group appears in releases 3.95 to 3.98

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 81-82-73-43-54-75-6
1 IL_6CK5_0026CK50.407708-nt loop receptorAGuanidine-I riboswitchG16G17U18U19C20*G42A43C44cWWcWWcSHcSHtHScWW
2 IL_6DME_0026DME0.361508-nt loop receptorAppGpp RiboswitchG15G16A17U18C19*G37A38C39cWWcWWncSHncSHtHScWW
3 IL_7ENI_0017ENI0.10290BsgRNA (74-MER)A42A43U44C45U46*A29C30U31cWWncSHncwWcWW
4 IL_7EL1_0017EL10.00000BRNA (73-MER)A42A43U44C45U46*A29C30U31cWWncWWancwWcWW
5 IL_6M0X_0016M0X0.15930BRNA (71-MER)A38A39G40C41U42*A29C30U31cWWncWWancSHncwWcWW
6 IL_4PDB_0014PDB0.55930Other ILISELEX RNA aptamerC9A10G11U12G13*C28A29G30cWWcwWcSHcWW
7 IL_8P9A_3158P9A0.70600Major groove platform with extra pair (H)AR LSU rRNAG2206A2207A2208U2209G2210*C2235G2236C2237cWWntHHncSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AAUCU*ACU2
GGUUC*GAC1
GGAUC*GAC1
AAGCU*ACU1
CAGUG*CAG1
GAAUG*CGC1
Non-Watson-Crick part of the motif
SequenceCounts
AUC*C2
GUU*A1
GAU*A1
AGC*C1
AGU*A1
AAU*G1

Release history

Release3.953.963.973.98
Date2025-03-262025-04-232025-05-212025-06-18
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • 8-nt loop receptor (2)
  • Other IL (1)
  • Major groove platform with extra pair (H) (1)
    • Basepair signature
    cWW-cWW-cSH-cWW-L
    Heat map statistics
    Min 0.10 | Avg 0.41 | Max 0.83
    Help

    Coloring options:

    IL_6CK5_002:IL_6CK5_002 = 0IL_6CK5_002:IL_6DME_002 = 0.1284IL_6CK5_002:IL_7ENI_001 = 0.4018IL_6CK5_002:IL_7EL1_001 = 0.4077IL_6CK5_002:IL_6M0X_001 = 0.4064IL_6CK5_002:IL_4PDB_001 = 0.5987IL_6CK5_002:IL_8P9A_315 = 0.8282IL_6DME_002:IL_6CK5_002 = 0.1284IL_6DME_002:IL_6DME_002 = 0IL_6DME_002:IL_7ENI_001 = 0.3506IL_6DME_002:IL_7EL1_001 = 0.3615IL_6DME_002:IL_6M0X_001 = 0.3714IL_6DME_002:IL_4PDB_001 = 0.5557IL_6DME_002:IL_8P9A_315 = 0.8117IL_7ENI_001:IL_6CK5_002 = 0.4018IL_7ENI_001:IL_6DME_002 = 0.3506IL_7ENI_001:IL_7ENI_001 = 0IL_7ENI_001:IL_7EL1_001 = 0.1029IL_7ENI_001:IL_6M0X_001 = 0.2121IL_7ENI_001:IL_4PDB_001 = 0.5592IL_7ENI_001:IL_8P9A_315 = 0.703IL_7EL1_001:IL_6CK5_002 = 0.4077IL_7EL1_001:IL_6DME_002 = 0.3615IL_7EL1_001:IL_7ENI_001 = 0.1029IL_7EL1_001:IL_7EL1_001 = 0IL_7EL1_001:IL_6M0X_001 = 0.1593IL_7EL1_001:IL_4PDB_001 = 0.5593IL_7EL1_001:IL_8P9A_315 = 0.706IL_6M0X_001:IL_6CK5_002 = 0.4064IL_6M0X_001:IL_6DME_002 = 0.3714IL_6M0X_001:IL_7ENI_001 = 0.2121IL_6M0X_001:IL_7EL1_001 = 0.1593IL_6M0X_001:IL_6M0X_001 = 0IL_6M0X_001:IL_4PDB_001 = 0.5736IL_6M0X_001:IL_8P9A_315 = 0.7296IL_4PDB_001:IL_6CK5_002 = 0.5987IL_4PDB_001:IL_6DME_002 = 0.5557IL_4PDB_001:IL_7ENI_001 = 0.5592IL_4PDB_001:IL_7EL1_001 = 0.5593IL_4PDB_001:IL_6M0X_001 = 0.5736IL_4PDB_001:IL_4PDB_001 = 0IL_4PDB_001:IL_8P9A_315 = 0.4027IL_8P9A_315:IL_6CK5_002 = 0.8282IL_8P9A_315:IL_6DME_002 = 0.8117IL_8P9A_315:IL_7ENI_001 = 0.703IL_8P9A_315:IL_7EL1_001 = 0.706IL_8P9A_315:IL_6M0X_001 = 0.7296IL_8P9A_315:IL_4PDB_001 = 0.4027IL_8P9A_315:IL_8P9A_315 = 0IL_6CK5_002IL_6DME_002IL_7ENI_001IL_7EL1_001IL_6M0X_001IL_4PDB_001IL_8P9A_315Discrepancy0.000.200.400.600.80
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