Motif IL_36516.3 Version IL_36516.3 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 3-5 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_315 | 8P9A | 0.7060 | 0 | Major groove platform with extra pair (H) | AR | LSU rRNA | G | 2206 | A | 2207 | A | 2208 | U | 2209 | G | 2210 | * | C | 2235 | G | 2236 | C | 2237 | cWW | ntHH | ncSH | cWW | ||
| 2 | IL_4PDB_001 | 4PDB | 0.5593 | 0 | Other IL | I | SELEX RNA aptamer | C | 9 | A | 10 | G | 11 | U | 12 | G | 13 | * | C | 28 | A | 29 | G | 30 | cWW | cwW | cSH | cWW | ||
| 3 | IL_6M0X_001 | 6M0X | 0.1593 | 0 | B | RNA (71-MER) | A | 38 | A | 39 | G | 40 | C | 41 | U | 42 | * | A | 29 | C | 30 | U | 31 | cWW | ncWWa | ncSH | ncwW | cWW | ||
| 4 | IL_7EL1_001 | 7EL1 | 0.0000 | 0 | B | RNA (73-MER) | A | 42 | A | 43 | U | 44 | C | 45 | U | 46 | * | A | 29 | C | 30 | U | 31 | cWW | ncWWa | ncwW | cWW | |||
| 5 | IL_7ENI_001 | 7ENI | 0.1029 | 0 | B | sgRNA (74-MER) | A | 42 | A | 43 | U | 44 | C | 45 | U | 46 | * | A | 29 | C | 30 | U | 31 | cWW | ncSH | ncwW | cWW | |||
| 6 | IL_6DME_002 | 6DME | 0.3615 | 0 | 8-nt loop receptor | A | ppGpp Riboswitch | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | * | G | 37 | A | 38 | C | 39 | cWW | cWW | ncSH | ncSH | tHS | cWW |
| 7 | IL_6CK5_002 | 6CK5 | 0.4077 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 42 | A | 43 | C | 44 | cWW | cWW | cSH | cSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUCU*ACU | 2 |
| GAAUG*CGC | 1 |
| CAGUG*CAG | 1 |
| AAGCU*ACU | 1 |
| GGAUC*GAC | 1 |
| GGUUC*GAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUC*C | 2 |
| AAU*G | 1 |
| AGU*A | 1 |
| AGC*C | 1 |
| GAU*A | 1 |
| GUU*A | 1 |
- Annotations
-
- (3)
- 8-nt loop receptor (2)
- Other IL (1)
- Major groove platform with extra pair (H) (1)
- Basepair signature
- cWW-cWW-cSH-cWW-L
- Heat map statistics
- Min 0.10 | Avg 0.41 | Max 0.83
Coloring options: