Motif IL_36940.1 Version IL_36940.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5J7L_327 | 5J7L | 0.4488 | 0 | Other IL | DA | LSU rRNA | C | 2103 | C | 2104 | U | 2105 | U | 2106 | * | A | 2183 | A | 2184 | U | 2185 | G | 2186 | cWW | ncWW | ntHS | ncWW |
2 | IL_5UNE_005 | 5UNE | 0.4196 | 0 | tSH-tHW | B+A | RNA (47-MER) | G | 21 | C | 22 | A | 23 | C | 24 | * | G | 21 | C | 22 | A | 23 | C | 24 | cWW | ntWH | ncWS | cWW |
3 | IL_7LO9_004 | 7LO9 | 0.0000 | 0 | A+B | Chains: A,B,C,D | 5BU | 7 | U | 8 | A | 9 | G | 10 | * | C | 3 | G | 4 | ZAD | 5 | A | 6 | cWW | tWW | tHS | cWW | |
4 | IL_7LO9_003 | 7LO9 | 0.2608 | 0 | B+A | Chains: A,B,C,D | 5BU | 7 | U | 8 | A | 9 | G | 10 | * | C | 3 | G | 4 | ZAD | 5 | A | 6 | cWW | ntWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
(5BU)UAG*CG(ZAD)A | 2 |
CCUU*AAUG | 1 |
GCAC*GCAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UA*G(ZAD) | 2 |
CU*AU | 1 |
CA*CA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Other IL (1)
- tSH-tHW (1)
- Basepair signature
- cWW-L-R-tHS-cWW
- Heat map statistics
- Min 0.26 | Avg 0.31 | Max 0.53
Coloring options: