Motif IL_37104.6 Version IL_37104.6 of this group appears in releases 1.17 to 1.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_1VWW_133	1VWW	0.2454	2		5	LSU rRNA	C	4243	A	4244	G	4245	*	C	4263	G	4264	G	4267		tHS	cWW
2	IL_4QCN_085	4QCN	0.3014	2		A	LSU rRNA	C	2309	A	2310	G	2311	*	C	2329	G	2330	G	2333	cWW	tHS	cWW
3	IL_1S72_078	1S72	0.2794	2		0	LSU rRNA	C	2331	A	2332	G	2333	*	C	2351	G	2352	G	2355	cWW	tHS	cWW
4	IL_4A1B_102	4A1B	0.2319	2		1	LSU rRNA	C	2655	A	2656	G	2657	*	C	2675	G	2676	G	2679	cWW	tHS	cWW
5	IL_4IOA_082	4IOA	0.2367	2	Isolated tHS basepair with bulges	X	LSU rRNA	C	2276	A	2277	A	2278	*	U	2296	G	2297	G	2300	cWW	ntHS	cWW
6	IL_1VX6_106	1VX6	0.1928	2		A	LSU rRNA	C	3005	A	3006	A	3007	*	U	3025	G	3026	G	3029	cWW	tHS	cWW
7	IL_3U5H_104	3U5H	0.2297	2		5	LSU rRNA	C	2666	A	2667	U	2668	*	A	2686	G	2687	G	2690	cWW	tHS	cWW
8	IL_4CUV_109	4CUV	0.2459	2		1	LSU rRNA	C	2666	A	2667	U	2668	*	A	2686	G	2687	G	2690	cWW	ntHS	cWW
9	IL_1S72_076	1S72	0.0997	1	Isolated tHS basepair with bulges (H)	0	LSU rRNA	C	2122	A	2123	G	2124	*	C	2269	G	2270	G	2272	cWW	tHS	cWW
10	IL_4QCN_078	4QCN	0.0000	1		A	LSU rRNA	C	2103	A	2104	G	2105	*	C	2248	G	2249	G	2251	cWW	tHS	cWW
11	IL_4QCN_011	4QCN	0.1442	1		A	LSU rRNA	C	312	A	313	G	314	*	U	374	G	375	G	377	cWW	tHS	cWW
12	IL_3U5H_100	3U5H	0.2780	1		5	LSU rRNA	U	2423	A	2424	G	2425	*	U	2604	G	2605	G	2607	cWW	tHS	cWW
13	IL_4CUV_103	4CUV	0.2927	1		1	LSU rRNA	U	2423	A	2424	G	2425	*	U	2604	G	2605	G	2607	cWW	tHS	cWW
14	IL_1VX6_102	1VX6	0.2818	1		A	LSU rRNA	U	2716	A	2717	G	2718	*	U	2943	G	2944	G	2946	cWW	tHS	cWW
15	IL_2QBG_082	2QBG	0.2563	1		B	LSU rRNA	U	2081	A	2082	G	2083	*	U	2236	G	2237	G	2239	cWW	tHS	cWW
16	IL_4IOA_077	4IOA	0.2749	1	Isolated tHS basepair with bulges	X	LSU rRNA	U	2064	A	2065	G	2066	*	C	2215	G	2216	G	2218	cWW	tHS	cWW
17	IL_1VW3_066	1VW3	0.3262	1		A	LSU rRNA	U	1981	A	1982	A	1983	*	U	2262	U	2263	G	2265	cWW	ntHS	cWW
18	IL_4BPP_026	4BPP	0.7975	1		A	SSU rRNA	C	492	A	494	C	495	*	G	477	G	478	G	479	cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAG*UGGG	4
CAA*UGUAG	2
CAU*AGUAG	2
CAG*CGGG	2
CAG*CGUGG	1
CAG*CGGAG	1
CAG*CGAAG	1
CAG*CGUAG	1
CAG*UGGG	1
UAG*CGGG	1
UAA*UUGG	1
CUAC*GGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*GG	8
A*GUA	5
A*GUG	1
A*GGA	1
A*GAA	1
A*UG	1
UA*G	1

Release history

Release	1.17
Date	2014-09-04
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_37104.6	Only in the parent motif
IL_37104.5 Compare	IL_1VW3_066, IL_2QBG_082, IL_3U5H_100, IL_4IOA_082, IL_4CUV_109, IL_3U5H_104, IL_4IOA_077, IL_4BPP_026, IL_1S72_078, IL_1S72_076, IL_4CUV_103, IL_4A1B_102	IL_4QCN_078, IL_4QCN_085, IL_1VWW_133, IL_4QCN_011, IL_1VX6_102, IL_1VX6_106	IL_4NVV_082, IL_4NVV_084, IL_4NVV_012

Children motifs

Child motif	Common motif instances	Only in IL_37104.6	Only in the child motif
IL_37104.7 Compare	IL_1VW3_066, IL_4CUV_103, IL_1S72_078, IL_4IOA_082, IL_4QCN_085, IL_4BPP_026, IL_1S72_076, IL_3U5H_104, IL_4IOA_077, IL_4QCN_011, IL_4CUV_109, IL_3U5H_100, IL_4QCN_078, IL_1VX6_102, IL_2QBG_082, IL_1VX6_106, IL_4A1B_102	IL_1VWW_133	IL_4W21_125, IL_4W21_132

Annotations: (15)
Isolated tHS basepair with bulges (2)
Isolated tHS basepair with bulges (H) (1)
Basepair signature: cWW-tHS-cWW
Heat map statistics: Min 0.10 | Avg 0.34 | Max 1.00

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Coloring options: Nucleotide numbers

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