IL_4IOA_082

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.4

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4IOA|1|X|C|2276
4IOA|1|X|A|2277
4IOA|1|X|A|2278
*
4IOA|1|X|U|2296
4IOA|1|X|G|2297
4IOA|1|X|U|2298
4IOA|1|X|A|2299
4IOA|1|X|G|2300

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18

Chain Y

5S ribosomal RNA; 5S rRNA