Motif IL_37964.2 Version IL_37964.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-4 | 1-6 | 2-3 | 4-5 | 4-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NTB_003 | 1NTB | 0.3990 | 0 | B+A | RNA (18-mer) | G | 110 | G | 111 | * | C | 15 | U | 16 | U | 17 | C | 18 | cWW | cWW | ||||
| 2 | IL_4IOA_022 | 4IOA | 0.3496 | 0 | Major groove platform; stack outside cWW (H) | X | LSU rRNA | A | 944 | G | 945 | * | U | 857 | G | 858 | U | 859 | U | 860 | cWW | cWW | |||
| 3 | IL_4QCN_062 | 4QCN | 0.3340 | 0 | A | 23S Ribosomal RNA | U | 2015 | C | 2016 | * | G | 1713 | G | 1714 | A | 1715 | A | 1716 | tHS | cWW | cWW | |||
| 4 | IL_1S72_008 | 1S72 | 0.2443 | 0 | Major groove platform; stack outside cWW (H) | 0 | LSU rRNA | U | 265 | G | 266 | * | C | 245 | G | 246 | A | 247 | A | 248 | tHS | cWW | cWW | ||
| 5 | IL_4QK9_003 | 4QK9 | 0.3028 | 0 | Major groove platform; stack outside cWW | A | C-di-AMP riboswitch | G | 43 | G | 44 | * | C | 93 | G | 94 | U | 95 | C | 96 | ntHS | cWW | cWW | ||
| 6 | IL_4QK8_003 | 4QK8 | 0.2151 | 0 | A | C-di-AMP riboswitch | G | 39 | G | 40 | * | C | 89 | G | 90 | A | 91 | C | 92 | tHS | cWW | cWW | ncSH | ||
| 7 | IL_3J7A_040 | 3J7A | 0.1434 | 0 | Major groove platform; stack outside cWW (H) | A | SSU rRNA | A | 933 | G | 934 | * | C | 1031 | A | 1032 | U | 1033 | U | 1034 | cWW | cWW | |||
| 8 | IL_3U5F_045 | 3U5F | 0.1313 | 0 | 6 | 18S rRNA | A | 865 | G | 866 | * | C | 962 | A | 963 | U | 964 | U | 965 | cWW | cWW | ||||
| 9 | IL_4BPP_042 | 4BPP | 0.0000 | 0 | A | 18S RRNA | A | 843 | G | 844 | * | C | 940 | A | 941 | U | 942 | U | 943 | cWW | cWW | ncSH | |||
| 10 | IL_4W23_042 | 4W23 | 0.1731 | 0 | 2 | 18S ribosomal RNA | A | 922 | G | 923 | * | C | 1019 | A | 1020 | U | 1021 | U | 1022 | cWW | cWW | cSH | |||
| 11 | IL_4QCN_046 | 4QCN | 0.2372 | 0 | A | 23S Ribosomal RNA | A | 1649 | C | 1650 | * | G | 1356 | G | 1357 | U | 1358 | U | 1359 | cWW | cWW | cSH | |||
| 12 | IL_4A1B_065 | 4A1B | 0.5590 | 0 | 1 | 26S RRNA | A | 1859 | C | 1860 | * | G | 1518 | G | 1519 | U | 1520 | U | 1521 | cWW | cWW | ||||
| 13 | IL_4IOA_048 | 4IOA | 0.6012 | 0 | Major groove platform; stack outside cWW (H) | X | LSU rRNA | A | 1619 | C | 1620 | * | G | 1323 | G | 1324 | U | 1325 | U | 1326 | cWW | cWW | |||
| 14 | IL_1S72_050 | 1S72 | 0.5963 | 0 | Major groove platform; stack outside cWW (H) | 0 | LSU rRNA | A | 1678 | C | 1679 | * | G | 1416 | G | 1417 | U | 1418 | U | 1419 | cWW | cWW | |||
| 15 | IL_3U5H_067 | 3U5H | 0.5968 | 0 | 5 | 25S rRNA | A | 1835 | C | 1836 | * | G | 1492 | G | 1493 | U | 1494 | U | 1495 | cWW | cWW | ||||
| 16 | IL_1VX6_027 | 1VX6 | 0.6846 | 0 | A | 28S ribosomal RNA | G | 599 | U | 600 | * | G | 591 | C | 592 | A | 593 | C | 594 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AC*GGUU | 5 |
| AG*CAUU | 4 |
| GG*CUUC | 1 |
| AG*UGUU | 1 |
| UC*GGAA | 1 |
| UG*CGAA | 1 |
| GG*CGUC | 1 |
| GG*CGAC | 1 |
| GU*GCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GU | 7 |
| *AU | 4 |
| *GA | 3 |
| *UU | 1 |
| *CA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_37964.2 | Only in the parent motif |
|---|---|---|---|
| IL_37964.1 Compare | IL_4QCN_046, IL_4IOA_048, IL_1VX6_027, IL_1S72_008, IL_1S72_050, IL_4QK8_003, IL_1NTB_003, IL_4BPP_042, IL_3U5H_067, IL_4QCN_062, IL_3J7A_040, IL_4A1B_065, IL_4IOA_022, IL_4QK9_003, IL_3U5F_045 | IL_4W23_042 | IL_1VX2_040 |
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- Major groove platform; stack outside cWW (H) (5)
- Major groove platform; stack outside cWW (1)
- Basepair signature
- cWW-tHS-R-cWW
- Heat map statistics
- Min 0.07 | Avg 0.43 | Max 0.80
Coloring options: