Motif IL_38028.1 Version IL_38028.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 2-7 | 3-4 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3NPB_004 | 3NPB | 0.0000 | 0 | A | TL5 RNA | C | 45 | A | 46 | A | 47 | C | 48 | * | G | 77 | U | 78 | G | 79 | cWW | ntSH | ncSH | cWW | ||
| 2 | IL_1J2B_003 | 1J2B | 0.3727 | 0 | D | tRNA(Val) | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | cWW | ncWW | cWW | |||
| 3 | IL_3O58_110 | 3O58 | 0.5270 | 0 | 1 | 25S ribosomal RNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | ncWW | ncWW | cSH | cWW | |
| 4 | IL_3Q1Q_006 | 3Q1Q | 0.9770 | 0 | B | RNase P RNA | G | 198 | G | 199 | C | 200 | U | 201 | * | A | 179 | G | 180 | C | 181 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAC*GUG | 1 |
| GAGG*CGC | 1 |
| GCGG*UAC | 1 |
| GGCU*AGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*U | 1 |
| AG*G | 1 |
| CG*A | 1 |
| GC*G | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_38028.1 | Only in the child motif |
|---|---|---|---|
| IL_27618.1 Compare | IL_3NPB_004, IL_1J2B_003 | IL_3Q1Q_006, IL_3O58_110 | IL_1X8W_009, IL_4A1B_093, IL_3U5H_096, IL_2ZJR_059, IL_2DER_001, IL_4A1B_089, IL_3U5H_071, IL_1S72_072, IL_3U5H_012 |
| IL_86357.1 Compare | IL_3Q1Q_006 | IL_3NPB_004, IL_1J2B_003, IL_3O58_110 | IL_2QBG_063, IL_3UXR_062, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_2XZM_064, IL_2ZJR_061 |
Coloring options: