#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 71-72-63-44-5
1 IL_3NPB_0043NPB0.00000ATL5 RNAC45A46A47C48*G77U78G79cWWntSHncSHcWW
2 IL_1J2B_0031J2B0.37270DtRNA(Val)G944A945G946G947*C926G927C928ncWWcWW
3 IL_3O58_1103O580.52700125S ribosomal RNAG2391C2392G2393G2394*U2986A2987C2988cWWncWWncSHcWW
4 IL_3Q1Q_0063Q1Q0.97700BRNase P RNAG198G199C200U201*A179G180C181cWWncBWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAC*GUG1
GAGG*CGC1
GCGG*UAC1
GGCU*AGC1
Non-Watson-Crick part of the motif
SequenceCounts
AA*U1
AG*G1
CG*A1
GC*G1

Release history

Release0.5
Date2011-12-08
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_38028.1Only in the child motif
IL_27618.1
Compare
IL_3NPB_004, IL_1J2B_003IL_3Q1Q_006, IL_3O58_110IL_1X8W_009, IL_4A1B_093, IL_3U5H_096, IL_2ZJR_059, IL_2DER_001, IL_4A1B_089, IL_3U5H_071, IL_1S72_072, IL_3U5H_012
IL_86357.1
Compare
IL_3Q1Q_006IL_3NPB_004, IL_1J2B_003, IL_3O58_110IL_2QBG_063, IL_3UXR_062, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_2XZM_064, IL_2ZJR_061
Annotations
  • (4)
  • Basepair signature
    Heat map statistics
    Min 0.37 | Avg 0.53 | Max 0.98
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