Motif IL_86357.1 Version IL_86357.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3Q1Q_006 | 3Q1Q | 0.0000 | 1 | B | RNase P RNA | A | 179 | G | 180 | C | 181 | * | G | 198 | G | 199 | U | 201 | cWW | cWW | ||
| 2 | IL_2XZM_064 | 2XZM | 0.4488 | 0 | A | 18S RRNA | U | 1221 | U | 1222 | U | 1223 | * | A | 1206 | C | 1207 | A | 1208 | cWW | ntSH | cWW | |
| 3 | IL_2QBG_063 | 2QBG | 0.9694 | 0 | B | 23S rRNA | U | 1995 | C | 1996 | C | 1997 | * | G | 1663 | A | 1664 | A | 1665 | cWW | tWW | cWW | |
| 4 | IL_1S72_060 | 1S72 | 0.9434 | 0 | 0 | LSU rRNA | C | 2036 | C | 2037 | A | 2038 | * | U | 1741 | A | 1742 | G | 1743 | cWW | tWW | cWW | |
| 5 | IL_3UXR_062 | 3UXR | 0.9635 | 0 | A | 23S ribosomal RNA | U | 1995 | C | 1996 | G | 1997 | * | C | 1663 | A | 1664 | A | 1665 | cWW | tWW | cWW | |
| 6 | IL_4A1B_079 | 4A1B | 0.9848 | 0 | 1 | 26S RRNA | C | 2333 | C | 2334 | U | 2335 | * | A | 1919 | A | 1920 | G | 1921 | cWW | tWW | cWW | |
| 7 | IL_3U5H_083 | 3U5H | 0.9854 | 0 | 5 | 25S rRNA | C | 2338 | C | 2339 | U | 2340 | * | A | 1895 | A | 1896 | G | 1897 | cWW | tWW | cWW | |
| 8 | IL_2ZJR_061 | 2ZJR | 0.9597 | 0 | X | LSU rRNA | U | 1978 | C | 1979 | A | 1980 | * | U | 1680 | A | 1681 | A | 1682 | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCU*AAG | 2 |
| AGC*GGCU | 1 |
| ACA*UUU | 1 |
| UCC*GAA | 1 |
| CCA*UAG | 1 |
| CAA*UCG | 1 |
| UCA*UAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*A | 5 |
| G*GC | 1 |
| C*U | 1 |
| A*C | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_86357.1 | Only in the parent motif |
|---|---|---|---|
| IL_23428.1 Compare | IL_1S72_060, IL_2QBG_063, IL_2ZJR_061 | IL_3Q1Q_006, IL_3U5H_083, IL_3UXR_062, IL_2XZM_064, IL_4A1B_079 | IL_3O58_093 |
| IL_38028.1 Compare | IL_3Q1Q_006 | IL_2QBG_063, IL_3UXR_062, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_2XZM_064, IL_2ZJR_061 | IL_3NPB_004, IL_1J2B_003, IL_3O58_110 |
| IL_95015.1 Compare | IL_2XZM_064 | IL_2QBG_063, IL_3Q1Q_006, IL_3UXR_062, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_2ZJR_061 | IL_3LOA_003, IL_3O58_082, IL_2QBG_065, IL_3O30_064, IL_2QEK_002, IL_1S72_062, IL_2ZJR_063, IL_3O58_095 |
Children motifs
| Child motif | Common motif instances | Only in IL_86357.1 | Only in the child motif |
|---|---|---|---|
| IL_86357.2 Compare | IL_2QBG_063, IL_4A1B_079, IL_1S72_060, IL_3U5H_083, IL_2XZM_064, IL_2ZJR_061 | IL_3Q1Q_006, IL_3UXR_062 | IL_3V2F_062 |
| IL_27618.2 Compare | IL_3Q1Q_006 | IL_2QBG_063, IL_3UXR_062, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_2XZM_064, IL_2ZJR_061 | IL_1X8W_009, IL_1S72_072, IL_2ZJR_059, IL_3U5H_096, IL_4A1B_089, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093, IL_3NPB_004, IL_3U5H_012 |
- Annotations
- Basepair signature
- 06_cWW-tWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.44 | Max 0.99
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