Motif IL_27618.1 Version IL_27618.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1X8W_009 | 1X8W | 0.5907 | 0 | A | Tetrahymena ribozyme RNA | G | 331 | U | 403 | U | 404 | G | 405 | * | C | 316 | U | 317 | C | 318 | cWW | cWW | |||
| 2 | IL_1S72_072 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | G | 2090 | G | 2091 | G | 2092 | G | 2093 | * | U | 2652 | A | 2653 | C | 2654 | cWW | cWW | cSH | cWW | |
| 3 | IL_3U5H_071 | 3U5H | 0.3768 | 0 | 5 | 25S rRNA | G | 1618 | A | 1619 | U | 1620 | A | 1621 | * | U | 1824 | G | 1825 | C | 1826 | cWW | cSW | cWW | ||
| 4 | IL_3NPB_004 | 3NPB | 0.3681 | 0 | A | TL5 RNA | C | 45 | A | 46 | A | 47 | C | 48 | * | G | 77 | U | 78 | G | 79 | cWW | ntSH | ncSH | cWW | |
| 5 | IL_1J2B_003 | 1J2B | 0.4399 | 0 | D | tRNA(Val) | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | ncWW | cWW | |||
| 6 | IL_4A1B_093 | 4A1B | 0.4416 | 0 | 1 | 26S RRNA | G | 2386 | C | 2387 | G | 2388 | G | 2389 | * | U | 2974 | A | 2975 | C | 2976 | cWW | cWW | cSH | cWW | |
| 7 | IL_3U5H_096 | 3U5H | 0.5046 | 0 | 5 | 25S rRNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | cWW | cSH | cWW | |
| 8 | IL_3U5H_012 | 3U5H | 0.5456 | 1 | 5 | 25S rRNA | G | 237 | A | 238 | G | 239 | G | 241 | * | U | 177 | U | 178 | C | 179 | ncWW | ncWW | cSH | cWW | |
| 9 | IL_2ZJR_059 | 2ZJR | 0.5500 | 1 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | * | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | cWW | ||
| 10 | IL_4A1B_089 | 4A1B | 0.8030 | 1 | 1 | 26S RRNA | G | 2201 | A | 2202 | A | 2203 | G | 2205 | * | C | 2230 | G | 2231 | C | 2232 | cWW | ncWW | ncSH | cWW | |
| 11 | IL_2DER_001 | 2DER | 0.9149 | 0 | C | tRNA | C | 4 | C | 5 | C | 6 | U | 7 | * | A | 66 | G | 67 | G | 68 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGG*UAC | 2 |
| GUUG*CUC | 1 |
| GGGG*UAC | 1 |
| GAUA*UGC | 1 |
| CAAC*GUG | 1 |
| GAGG*CGC | 1 |
| GAGUG*UUC | 1 |
| GGUCA*UAC | 1 |
| GAAUG*CGC | 1 |
| CCCU*AGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG*A | 2 |
| UU*U | 1 |
| GG*A | 1 |
| AU*G | 1 |
| AA*U | 1 |
| AG*G | 1 |
| AGU*U | 1 |
| GUC*A | 1 |
| AAU*G | 1 |
| CC*G | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | > 2 parents |
Parent motifs
Children motifs
| Child motif | Common motif instances | Only in IL_27618.1 | Only in the child motif |
|---|---|---|---|
| IL_27618.2 Compare | IL_1X8W_009, IL_1S72_072, IL_2ZJR_059, IL_3U5H_096, IL_4A1B_089, IL_1J2B_003, IL_3U5H_071, IL_4A1B_093, IL_3NPB_004, IL_3U5H_012 | IL_2DER_001 | IL_3Q1Q_006 |
- Annotations
-
- (11)
- Basepair signature
- 07_cWW-cWW-cSH-cWW
- Heat map statistics
- Min 0.12 | Avg 0.54 | Max 0.96
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