Motif IL_39980.2 Version IL_39980.2 of this group appears in releases 1.15 to 1.18

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	break		5		6	1-6	3-4	4-5
1	IL_4BPP_061	4BPP	0.5426	2	A	18S RRNA	A	1197	A	1198	G	1201	A	1202	*	U	1229	U	1230	cWW	ncSH	cWW
2	IL_1S72_009	1S72	0.2601	2	0	LSU rRNA	C	260	A	261	G	264	U	265	*	A	248	G	249	cWW		cWW
3	IL_4A1B_004	4A1B	0.1487	2	1	26S RRNA	A	144	A	145	G	148	U	149	*	A	121	U	122	cWW		cWW
4	IL_3U5H_007	3U5H	0.0000	2	5	25S rRNA	A	144	G	145	G	148	U	149	*	A	123	U	124	cWW		cWW
5	IL_4CUV_007	4CUV	0.1756	2	1	25S RRNA	A	144	G	145	G	148	U	149	*	A	123	U	124	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AGUUGU*AU	2
AAGGGA*UU	1
CAAUGU*AG	1
AAUUGU*AU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUG*	2
AGGG*	1
AAUG*	1
AUUG*	1

Release history

Release	1.15	1.17	1.18
Date	2014-06-20	2014-09-04	2014-10-07
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_39980.2	Only in the parent motif
IL_39980.1 Compare	IL_4A1B_004, IL_3U5H_007, IL_1S72_009, IL_4BPP_061	IL_4CUV_007

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-L-cSH-cWW
Heat map statistics: Min 0.15 | Avg 0.27 | Max 0.54

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__0223894144525456__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__0223894144525456__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/IL_39980.2","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__0223894144525456__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"0223894144525456","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/IL_39980.2"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__0223894144525456__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started

Script completed

Jmol script terminated

script 3 started

Script completed

Jmol script terminated

script 4 started

Script completed

Jmol script terminated

Coloring options: Nucleotide numbers

Motif IL_39980.2 Version IL_39980.2 of this group appears in releases 1.15 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_39980.2 Version IL_39980.2 of this group appears in releases 1.15 to 1.18

Download

Csv

Json