Motif IL_39980.2 Version IL_39980.2 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 3-4 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_061 | 4BPP | 0.5426 | 2 | A | SSU rRNA | A | 1197 | A | 1198 | G | 1201 | A | 1202 | * | U | 1229 | U | 1230 | cWW | ncSH | cWW |
| 2 | IL_1S72_009 | 1S72 | 0.2601 | 2 | 0 | LSU rRNA | C | 260 | A | 261 | G | 264 | U | 265 | * | A | 248 | G | 249 | cWW | cWW | |
| 3 | IL_4A1B_004 | 4A1B | 0.1487 | 2 | 1 | LSU rRNA | A | 144 | A | 145 | G | 148 | U | 149 | * | A | 121 | U | 122 | cWW | cWW | |
| 4 | IL_3U5H_007 | 3U5H | 0.0000 | 2 | 5 | LSU rRNA | A | 144 | G | 145 | G | 148 | U | 149 | * | A | 123 | U | 124 | cWW | cWW | |
| 5 | IL_4CUV_007 | 4CUV | 0.1756 | 2 | 1 | LSU rRNA | A | 144 | G | 145 | G | 148 | U | 149 | * | A | 123 | U | 124 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUUGU*AU | 2 |
| AAGGGA*UU | 1 |
| CAAUGU*AG | 1 |
| AAUUGU*AU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUG* | 2 |
| AGGG* | 1 |
| AAUG* | 1 |
| AUUG* | 1 |
Release history
| Release | 1.15 | 1.17 | 1.18 |
|---|---|---|---|
| Date | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | Updated, 1 parent | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_39980.2 | Only in the parent motif |
|---|---|---|---|
| IL_39980.1 Compare | IL_4A1B_004, IL_3U5H_007, IL_1S72_009, IL_4BPP_061 | IL_4CUV_007 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-L-cSH-cWW
- Heat map statistics
- Min 0.15 | Avg 0.27 | Max 0.54
Coloring options: