Motif IL_39980.1 Version IL_39980.1 of this group appears in releases 1.5 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 3-4 | 4-5 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4A1B_004 | 4A1B | 0.0000 | 2 | 1 | 26S RRNA | A | 144 | A | 145 | G | 148 | U | 149 | * | A | 121 | U | 122 | cWW | cWW | |
2 | IL_3U5H_007 | 3U5H | 0.1487 | 2 | 5 | 25S rRNA | A | 144 | G | 145 | G | 148 | U | 149 | * | A | 123 | U | 124 | cWW | cWW | |
3 | IL_1S72_009 | 1S72 | 0.2603 | 2 | 0 | LSU rRNA | C | 260 | A | 261 | G | 264 | U | 265 | * | A | 248 | G | 249 | cWW | cWW | |
4 | IL_4BPP_061 | 4BPP | 0.4998 | 2 | A | 18S RRNA | A | 1197 | A | 1198 | G | 1201 | A | 1202 | * | U | 1229 | U | 1230 | cWW | ncSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AAUUGU*AU | 1 |
AGUUGU*AU | 1 |
CAAUGU*AG | 1 |
AAGGGA*UU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUUG* | 1 |
GUUG* | 1 |
AAUG* | 1 |
AGGG* | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_39980.1 | Only in the parent motif |
---|---|---|---|
IL_92484.1 Compare | IL_4A1B_004, IL_3U5H_007, IL_1S72_009 | IL_4BPP_061 | IL_2XZM_018, IL_2XZM_062 |
Children motifs
Child motif | Common motif instances | Only in IL_39980.1 | Only in the child motif |
---|---|---|---|
IL_39980.2 Compare | IL_4A1B_004, IL_3U5H_007, IL_1S72_009, IL_4BPP_061 | IL_4CUV_007 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-cSH-cWW
- Heat map statistics
- Min 0.15 | Avg 0.27 | Max 0.54
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