#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 61-63-44-5
1 IL_4A1B_0044A1B0.00002126S RRNAA144A145G148U149*A121U122cWWcWW
2 IL_3U5H_0073U5H0.14872525S rRNAA144G145G148U149*A123U124cWWcWW
3 IL_1S72_0091S720.260320 LSU rRNAC260A261G264U265*A248G249cWWcWW
4 IL_4BPP_0614BPP0.49982A18S RRNAA1197A1198G1201A1202*U1229U1230cWWncSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AAUUGU*AU1
AGUUGU*AU1
CAAUGU*AG1
AAGGGA*UU1
Non-Watson-Crick part of the motif
SequenceCounts
AUUG*1
GUUG*1
AAUG*1
AGGG*1

Release history

Release1.51.61.71.81.91.101.111.121.131.14
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_39980.1Only in the parent motif
IL_92484.1
Compare
IL_4A1B_004, IL_3U5H_007, IL_1S72_009IL_4BPP_061IL_2XZM_018, IL_2XZM_062

Children motifs

Child motifCommon motif instancesOnly in IL_39980.1Only in the child motif
IL_39980.2
Compare
IL_4A1B_004, IL_3U5H_007, IL_1S72_009, IL_4BPP_061IL_4CUV_007
Annotations
  • (4)
  • Basepair signature
    cWW-L-cSH-cWW
    Heat map statistics
    Min 0.15 | Avg 0.27 | Max 0.54
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