Motif IL_40387.4 Version IL_40387.4 of this group appears in releases 0.11 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 5-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_093 | 2QBG | 0.2599 | 0 | B | 23S rRNA | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | ncSH | |||
| 2 | IL_2ZJR_087 | 2ZJR | 0.0000 | 0 | Major groove minor groove platform with extra cWW (H) | X | LSU rRNA | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | cwW | cWW | cSH | ||
| 3 | IL_2XXA_009 | 2XXA | 0.7152 | 0 | G | SSRP RNA | G | 10 | U | 11 | G | 12 | * | C | 89 | C | 90 | U | 91 | U | 92 | C | 93 | cWW | cWW | ntSH | ||||
| 4 | IL_3ZD3_001 | 3ZD3 | 0.7784 | 0 | A+B | HAMMERHEAD RIBOZYME, ENZYME STRAND + HAMMERHEAD RIBOZYME, SUBTRATE STRAND | A | 3 | U | 4 | G | 5 | * | C | 14 | C | 15 | A | 16 | A | 17 | U | 18 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUA*UGUUU | 1 |
| AUC*GGUUU | 1 |
| GUG*CCUUC | 1 |
| AUG*CCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GUU | 2 |
| U*CUU | 1 |
| U*CAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_40387.4 | Only in the parent motif |
|---|---|---|---|
| IL_40387.3 Compare | IL_2QBG_093, IL_2XXA_009, IL_2ZJR_087 | IL_3ZD3_001 | IL_2OEU_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_40387.4 | Only in the child motif |
|---|---|---|---|
| IL_08559.1 Compare | IL_2XXA_009, IL_2QBG_093 | IL_3ZD3_001, IL_2ZJR_087 | IL_3ZP8_001, IL_4IOA_088 |
- Annotations
-
- (3)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-cWW-cSH-R-cWW
- Heat map statistics
- Min 0.26 | Avg 0.48 | Max 0.84
Coloring options: