Motif IL_08559.1 Version IL_08559.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 5-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_093 | 2QBG | 0.3051 | 0 | B | 23S rRNA | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | ncSH | |||
| 2 | IL_4IOA_088 | 4IOA | 0.0000 | 0 | Major groove minor groove platform with extra cWW (H) | X | LSU rRNA | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | cwW | cWW | cSH | ||
| 3 | IL_2XXA_009 | 2XXA | 0.7195 | 0 | G | SSRP RNA | G | 10 | U | 11 | G | 12 | * | C | 89 | C | 90 | U | 91 | U | 92 | C | 93 | cWW | cWW | ntSH | ||||
| 4 | IL_3ZP8_001 | 3ZP8 | 0.7751 | 0 | A+B | HAMMERHEAD RIBOZYME, ENZYME STRAND + HAMMERHEAD RIBOZYME, SUBSTRATE STRAND | A | 3 | U | 4 | G | 5 | * | C | 14 | C | 15 | A | 16 | A | 17 | U | 18 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUA*UGUUU | 1 |
| AUC*GGUUU | 1 |
| GUG*CCUUC | 1 |
| AUG*CCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GUU | 2 |
| U*CUU | 1 |
| U*CAA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_08559.1 | Only in the parent motif |
|---|---|---|---|
| IL_40387.4 Compare | IL_2XXA_009, IL_2QBG_093 | IL_3ZP8_001, IL_4IOA_088 | IL_3ZD3_001, IL_2ZJR_087 |
Children motifs
| Child motif | Common motif instances | Only in IL_08559.1 | Only in the child motif |
|---|---|---|---|
| IL_25380.1 Compare | IL_2QBG_093, IL_2XXA_009, IL_4IOA_088 | IL_3ZP8_001 | IL_4GMA_007, IL_4BPP_071, IL_4GXY_009 |
| IL_57364.1 Compare | IL_3ZP8_001 | IL_2QBG_093, IL_2XXA_009, IL_4IOA_088 |
- Annotations
-
- (3)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-cWW-cSH-R-cWW
- Heat map statistics
- Min 0.31 | Avg 0.49 | Max 0.84
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