Motif IL_40979.2 Version IL_40979.2 of this group appears in releases 3.8 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4PMI_004 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||13_455 | G | 47||||13_455 | G | 48||||13_455 | C | 49||||13_455 | * | G | 70||||13_455 | G | 71||||13_455 | A | 73||||13_455 | C | 74||||13_455 | cWW | ntWW | cWW | tWW | cWW |
| 2 | IL_4PMI_010 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||24_444 | G | 47||||24_444 | G | 48||||24_444 | C | 49||||24_444 | * | G | 70||||24_444 | G | 71||||24_444 | A | 73||||24_444 | C | 74||||24_444 | cWW | ntWW | cWW | tWW | cWW |
| 3 | IL_4PMI_012 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||6_445 | G | 47||||6_445 | G | 48||||6_445 | C | 49||||6_445 | * | G | 70||||6_445 | G | 71||||6_445 | A | 73||||6_445 | C | 74||||6_445 | cWW | ntWW | cWW | tWW | cWW |
| 4 | IL_4PMI_006 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||18_445 | G | 47||||18_445 | G | 48||||18_445 | C | 49||||18_445 | * | G | 70||||18_445 | G | 71||||18_445 | A | 73||||18_445 | C | 74||||18_445 | cWW | ntWW | cWW | tWW | cWW |
| 5 | IL_4PMI_008 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | ntWW | cWW | tWW | cWW |
| 6 | IL_4PMI_002 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46||||12_455 | G | 47||||12_455 | G | 48||||12_455 | C | 49||||12_455 | * | G | 70||||12_455 | G | 71||||12_455 | A | 73||||12_455 | C | 74||||12_455 | cWW | ntWW | cWW | tWW | cWW |
| 7 | IL_3BNR_011 | 3BNR | 0.9324 | 1 | D+C | A site of human mitochondrial ribosome, chain three | C | 5 | A | 6 | C | 7 | C | 8 | * | G | 15 | C | 16 | A | 17 | G | 19 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGC*GGUAC | 6 |
| CACC*GCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*GUA | 6 |
| AC*CAA | 1 |
- Annotations
-
- tWW and non-canonical cWW (6)
- (1)
- Basepair signature
- cWW-cWW-tWW-cWW
- Heat map statistics
- Min 0.93 | Avg 0.23 | Max 0.93
Coloring options: