Motif IL_42626.1 Version IL_42626.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | 2-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ERD_001 | 4ERD | 0.6614 | 2 | C+D | RNA (22-mer) | C | 120 | C | 123 | * | G | 146 | G | 147 | cWW | cWW | ntsS | |
| 2 | IL_1KXK_003 | 1KXK | 0.5288 | 2 | Multiple bulged bases | A | ai5g group II Self-splicing intron | U | 28 | G | 29 | * | C | 42 | G | 45 | cWW | cWW | |
| 3 | IL_4WF9_103 | 4WF9 | 0.3762 | 2 | Multiple bulged bases | X | LSU rRNA | U | 2722 | U | 2723 | * | A | 2738 | G | 2741 | cWW | cWW | |
| 4 | IL_5J7L_349 | 5J7L | 0.3632 | 2 | Multiple bulged bases | DA | LSU rRNA | U | 2695 | U | 2696 | * | A | 2711 | G | 2714 | cWW | cWW | |
| 5 | IL_3IGI_013 | 3IGI | 0.2767 | 2 | Multiple bulged bases | A | Group IIC intron | U | 365 | A | 366 | * | U | 375 | G | 378 | cWW | cWW | |
| 6 | IL_7A0S_097 | 7A0S | 0.1707 | 3 | Multiple bulged bases | X | LSU rRNA | C | 2674 | U | 2675 | * | A | 2690 | G | 2694 | cWW | cWW | |
| 7 | IL_9DFE_105 | 9DFE | 0.1372 | 3 | 1A | LSU rRNA | C | 2695 | U | 2696 | * | A | 2711 | G | 2714 | cWW | cWW | ||
| 8 | IL_8P9A_336 | 8P9A | 0.1347 | 2 | Multiple bulged bases (H) | AR | LSU rRNA | C | 2881 | U | 2882 | * | A | 2940 | G | 2943 | cWW | cWW | |
| 9 | IL_4V9F_088 | 4V9F | 0.0000 | 2 | Multiple bulged bases | 0 | LSU rRNA | C | 2547 | C | 2548 | * | G | 2606 | G | 2609 | cWW | cWW | |
| 10 | IL_9DFE_098 | 9DFE | 0.2937 | 2 | 1A | LSU rRNA | C | 2512 | G | 2513 | * | C | 2571 | G | 2574 | cWW | cWW | ||
| 11 | IL_7A0S_090 | 7A0S | 0.3195 | 2 | Multiple bulged bases | X | LSU rRNA | C | 2491 | G | 2492 | * | C | 2550 | G | 2553 | cWW | cWW | |
| 12 | IL_4WF9_096 | 4WF9 | 0.3866 | 2 | X | LSU rRNA | C | 2539 | A | 2540 | * | U | 2598 | G | 2601 | cWW | cWW | ||
| 13 | IL_5J7L_341 | 5J7L | 0.4246 | 2 | DA | LSU rRNA | C | 2512 | A | 2513 | * | U | 2571 | G | 2574 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CACG | 2 |
| CA*UACG | 2 |
| CGAC*GG | 1 |
| UG*CACG | 1 |
| UU*AUAG | 1 |
| UU*ACUG | 1 |
| UA*UACG | 1 |
| CU*ACAUG | 1 |
| CU*AUAAG | 1 |
| CU*AACG | 1 |
| CC*GUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AC | 7 |
| GA* | 1 |
| *UA | 1 |
| *CU | 1 |
| *CAU | 1 |
| *UAA | 1 |
| *UC | 1 |
- Annotations
-
- Multiple bulged bases (7)
- (5)
- Multiple bulged bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.40 | Max 0.83
Coloring options: