Motif IL_42898.1 Version IL_42898.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-5 | 3-10 | 4-9 | 4-10 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_009 | 4LFB | 0.0000 | 1 | tWH-tWH-tHW-tHW | A | SSU rRNA | G | 148 | A | 149 | C | 150 | A | 151 | A | 152 | C | 153 | * | G | 168 | C | 169 | U | 170 | A | 171 | A | 172 | C | 174 | cWW | tWH | tWH | tHW | tHW | cWW | ||
| 2 | IL_4WF9_056 | 4WF9 | 0.9721 | 0 | X | LSU rRNA | C | 1604 | A | 1605 | C | 1606 | A | 1607 | C | 1608 | U | 1609 | * | A | 1475 | G | 1476 | U | 1477 | A | 1478 | G | 1479 | G | 1480 | cWW | ncWW | cSH | ncwW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACAAC*GCUAAUC | 1 |
| CACACU*AGUAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAA*CUAAU | 1 |
| ACAC*GUAG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tWH-tWH-tHW-tHW (1)
- (1)
- Basepair signature
- cWW-tWH-tWH-tWH-cSH-tHW-tHW-cWW
- Heat map statistics
- Min 0.97 | Avg 0.49 | Max 0.97
Coloring options: