Motif IL_42997.2 Version IL_42997.2 of this group appears in releases 3.95 to 3.95

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_7A0S_030	7A0S	0.2345	0	Isolated non-canonical cWW pair	X	LSU rRNA	A	883	C	884	A	885	*	U	917	A	918	U	919	cWW		cWW
2	IL_2ZI0_001	2ZI0	0.2465	0	Isolated near cWW basepair	D+C	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11	cWW		cWW
3	IL_8P9A_395	8P9A	0.2688	0	Isolated non-canonical cWW pair	sR	SSU rRNA	C	411	A	412	U	413	*	A	420	A	421	G	422	cWW	ncwW	cWW
4	IL_7VFT_002	7VFT	0.1766	0	Isolated non-canonical cWW pair	A	RNA (23-mer)	C	14	A	15	G	16	*	C	8\|\|\|\|12_555	A	9\|\|\|\|12_555	G	10\|\|\|\|12_555	cWW		cWW
5	IL_4V9F_077	4V9F	0.1938	0	Isolated non-canonical cWW pair	0	LSU rRNA	G	2136	A	2137	C	2138	*	G	2237	A	2238	C	2239	ncWW		cWW
6	IL_8CRE_412	8CRE	0.1088	0	Isolated cWS basepair	CM	SSU rRNA	C	409	A	410	U	411	*	A	418	A	419	G	420	cWW		cWW
7	IL_3NJ7_004	3NJ7	0.0000	0	Isolated non-canonical cWW pair	C+D	RNA (10-mer)	C	6	A	7	G	8	*	C	3	A	4	G	5	cWW		cWW
8	IL_3NJ7_003	3NJ7	0.0134	0	Isolated non-canonical cWW pair	D+C	RNA (10-mer)	C	6	A	7	G	8	*	C	3	A	4	G	5	cWW		cWW
9	IL_7VFT_001	7VFT	0.2120	0	Isolated non-canonical cWW contact	A	RNA (23-mer)	C	5\|\|\|\|12_555	A	6\|\|\|\|12_555	G	7\|\|\|\|12_555	*	C	17	A	18	G	19	cWW		cWW
10	IL_9DFE_029	9DFE	0.2774	0	Isolated cWS basepair	1A	LSU rRNA	A	870	U	871	A	872	*	U	905	G	906	U	907	cWW	cSW	cWW
11	IL_8P9A_285	8P9A	0.4101	1	Isolated cWS basepair	AR	LSU rRNA	A	1428	U	1430	G	1431	*	C	1376	G	1377	U	1378	cWW	cSW	cWW
12	IL_8CRE_061	8CRE	0.4076	1	Isolated cWS basepair	1	LSU rRNA	A	1424	U	1426	G	1427	*	C	1372	G	1373	U	1374	cWW	cSW	cWW
13	IL_4V9F_046	4V9F	0.4189	1	Isolated cWS basepair	0	LSU rRNA	G	1351	C	1353	G	1354	*	C	1301	G	1302	C	1303	cWW	cSW	cWW
14	IL_7A0S_041	7A0S	0.4590	1	Isolated cWS basepair	X	LSU rRNA	A	1260	U	1262	G	1263	*	C	1210	G	1211	U	1212	cWW	cSW	cWW
15	IL_4WF9_044	4WF9	0.4721	1	Isolated cWS basepair	X	LSU rRNA	A	1285	U	1287	G	1288	*	C	1235	G	1236	U	1237	cWW	cSW	cWW
16	IL_9DFE_044	9DFE	0.5107	1	Isolated cWS basepair	1A	LSU rRNA	A	1247	U	1249	G	1250	*	C	1196	G	1197	U	1198	cWW	cSW	cWW
17	IL_5J7L_286	5J7L	0.4780	1	Isolated cWS basepair	DA	LSU rRNA	A	1247	U	1249	G	1250	*	C	1196	G	1197	U	1198	cWW	cSW	cWW
18	IL_5E81_401	5E81	0.5999	0	Isolated cWS basepair	3L	tRNA	U	4	C	5	G	6	*	C	67	G	68	A	69	cWW	cSW	cWW
19	IL_7QR8_004	7QR8	0.6427	0	Isolated non-canonical cWW pair	A+C	tracrRNA + PTPRC off-target1 target strand	C	7	U	8	C	9	*	DG	11	DT	12	DG	13	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AGUG*CGU	6
CAG*CAG	4
CAU*AAG	2
ACA*UAU	1
UUA*UUA	1
GAC*GAC	1
AUA*UGU	1
GACG*CGC	1
UCG*CGA	1
CUC*GTG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*A	7
GU*G	6
C*A	1
U*U	1
U*G	1
AC*G	1
C*G	1
U*T	1

Release history

Release	3.95
Date	2025-03-26
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated cWS basepair (10)
Isolated non-canonical cWW pair (7)
Isolated near cWW basepair (1)
Isolated non-canonical cWW contact (1)
Basepair signature: cWW-L-R-cWW
Heat map statistics: Min 0.01 | Avg 0.37 | Max 0.74

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Coloring options: Nucleotide numbers

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