Motif IL_43065.1 Version IL_43065.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3V7E_005 | 3V7E | 0.2552 | 1 | C | SAM-I riboswitch | U | 96 | C | 98 | U | 99 | G | 100 | C | 101 | * | G | 114 | A | 115 | A | 116 | A | 117 | cWW | cWW | ||
| 2 | IL_4KQY_011 | 4KQY | 0.0000 | 1 | A | SAM-I riboswitch | U | 85||||4_555 | C | 87||||4_555 | A | 88||||4_555 | G | 89||||4_555 | C | 90||||4_555 | * | G | 106||||4_555 | G | 107||||4_555 | A | 108||||4_555 | A | 109||||4_555 | cWW | cWW | ||
| 3 | IL_4KQY_006 | 4KQY | 0.0000 | 1 | Pseudoknot | A | SAM-I riboswitch | U | 85 | C | 87 | A | 88 | G | 89 | C | 90 | * | G | 106 | G | 107 | A | 108 | A | 109 | cWW | cWW | |
| 4 | IL_4AOB_009 | 4AOB | 0.2217 | 1 | A | SAM-I riboswitch | U | 64||||7_555 | C | 66||||7_555 | U | 67||||7_555 | G | 68||||7_555 | C | 69||||7_555 | * | G | 82||||7_555 | A | 83||||7_555 | A | 84||||7_555 | A | 85||||7_555 | cWW | cWW | ||
| 5 | IL_4AOB_004 | 4AOB | 0.2217 | 1 | Pseudoknot | A | SAM-I riboswitch | U | 64 | C | 66 | U | 67 | G | 68 | C | 69 | * | G | 82 | A | 83 | A | 84 | A | 85 | cWW | cWW | |
| 6 | IL_5FJC_004 | 5FJC | 0.2284 | 1 | Pseudoknot | A | SAM-I riboswitch | U | 64 | C | 66 | U | 67 | G | 68 | C | 69 | * | G | 82 | A | 83 | A | 84 | A | 85 | cWW | cWW | |
| 7 | IL_1U6B_004 | 1U6B | 0.7779 | 0 | B | 197-MER | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | * | G | 119 | A | 120 | A | 121 | G | 122 | cWW | cWW | cWW | |
| 8 | IL_1Y0Q_002 | 1Y0Q | 0.8561 | 0 | A | Group I catalytic intron | U | 92 | A | 93 | A | 94 | G | 95 | C | 96 | * | G | 111 | A | 112 | A | 113 | A | 114 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCUGC*GAAA | 4 |
| UCCAGC*GGAA | 2 |
| CAAGC*GAAG | 1 |
| UAAGC*GAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUG*AA | 4 |
| CCAG*GA | 2 |
| AAG*AA | 2 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Pseudoknot (3)
- Basepair signature
- cWW-L-R-R-L-L-cWW
- Heat map statistics
- Min 0.14 | Avg 0.42 | Max 0.91
Coloring options: