Motif IL_43434.2 Version IL_43434.2 of this group appears in releases 4.10 to 4.12
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5XTM_004 | 5XTM | 0.2313 | 0 | Major groove intercalation | D | RNA (47-MER) | U | 3 | A | 4 | U | 5 | * | A | 44 | G | 45 | cWW | cWW |
| 2 | IL_5DCV_005 | 5DCV | 0.1917 | 0 | Major groove intercalation | D | RNA (47-MER) | U | 3 | A | 4 | U | 5 | * | A | 48 | G | 49 | cWW | cWW |
| 3 | IL_1U6B_010 | 1U6B | 0.1684 | 0 | Major groove intercalation | B | 197-MER | U | 160 | A | 161 | U | 162 | * | A | 150 | G | 151 | cWW | cWW |
| 4 | IL_5VCI_004 | 5VCI | 0.0000 | 0 | Major groove intercalation | B+A | RNA (12-mer) | U | 2 | A | 3 | U | 4 | * | A | 11 | G | 12 | cWW | cWW |
| 5 | IL_4PCJ_004 | 4PCJ | 0.0603 | 0 | Major groove intercalation | A | trCUG-3('5) | U | 25 | A | 26 | U | 27 | * | A | 11 | G | 12 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAU*AG | 5 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 5 |
- Annotations
-
- Major groove intercalation (5)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.06 | Avg 0.15 | Max 0.25
Coloring options: