Motif IL_43545.1 Version IL_43545.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1NUV_002 | 1NUV | 0.0000 | 1 | C+D | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 24 | A | 25 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | cWW | cWW | |
| 2 | IL_2QBG_108 | 2QBG | 0.7595 | 0 | B | 23S rRNA | C | 2870 | U | 2871 | A | 2872 | A | 2873 | C | 2874 | * | G | 2843 | G | 2844 | U | 2845 | G | 2846 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGAGC*GGAG | 1 |
| CUAAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAG*GA | 1 |
| UAA*GU | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_43545.1 | Only in the parent motif |
|---|---|---|---|
| IL_46301.1 Compare | IL_1NUV_002, IL_2QBG_108 | IL_3BNQ_002, IL_2AW7_010, IL_429D_002, IL_1FJG_008, IL_1NUV_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_43545.1 | Only in the child motif |
|---|---|---|---|
| IL_19493.1 Compare | IL_1NUV_002, IL_2QBG_108 | IL_429D_002, IL_4A1B_070 |
- Annotations
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Heat map statistics
- Min 0.76 | Avg 0.38 | Max 0.76
Coloring options: