Motif IL_19493.1 Version IL_19493.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_429D_002 | 429D | 0.1061 | 3 | D+C | RNA (11-mer) | G | 143 | G | 144 | A | 145 | G | 146 | * | C | 122 | C | 123 | C | 127 | cWW | cWW | |||
| 2 | IL_1NUV_002 | 1NUV | 0.0000 | 3 | D+C | RNA (11-mer) | G | 43 | G | 44 | A | 45 | G | 46 | * | C | 22 | C | 23 | C | 27 | cWW | cWW | cWW | ||
| 3 | IL_2QBG_108 | 2QBG | 0.4417 | 2 | B | 23S rRNA | G | 2843 | G | 2844 | U | 2845 | G | 2846 | * | C | 2870 | U | 2871 | C | 2874 | cWW | cWW | cWW | ||
| 4 | IL_4A1B_070 | 4A1B | 0.6224 | 1 | 1 | 26S RRNA | G | 1648 | G | 1649 | U | 1650 | A | 1651 | * | U | 1843 | U | 1844 | C | 1846 | cWW | ncWS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAG*CCGAGC | 2 |
| GGUG*CUAAC | 1 |
| GGUA*UUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*CGAG | 2 |
| GU*UAA | 1 |
| GU*UU | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_19493.1 | Only in the parent motif |
|---|---|---|---|
| IL_43545.1 Compare | IL_1NUV_002, IL_2QBG_108 | IL_429D_002, IL_4A1B_070 | |
| IL_69106.2 Compare | IL_4A1B_070 | IL_1NUV_002, IL_429D_002, IL_2QBG_108 | IL_2FQN_002, IL_3U5F_017 |
| IL_82133.1 Compare | IL_429D_002 | IL_1NUV_002, IL_4A1B_070, IL_2QBG_108 | IL_2FQN_003, IL_1NUV_003, IL_2OE5_002, IL_4NVV_105 |
Children motifs
| Child motif | Common motif instances | Only in IL_19493.1 | Only in the child motif |
|---|---|---|---|
| IL_77920.1 Compare | IL_1NUV_002, IL_429D_002, IL_2QBG_108 | IL_4A1B_070 | IL_3BNQ_002, IL_1NUV_003, IL_3J7A_010 |
| IL_51342.1 Compare | IL_4A1B_070 | IL_1NUV_002, IL_429D_002, IL_2QBG_108 | IL_4CUV_040, IL_2FQN_002, IL_4QIK_001, IL_1VX2_082, IL_1VX2_016, IL_1VW3_022, IL_4N0T_004 |
- Annotations
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.34 | Max 0.63
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