Motif IL_44546.1 Version IL_44546.1 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6JQ6_005 | 6JQ6 | 0.0802 | 2 | Multiple bulged bases | U | RNA (81-MER) | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
| 2 | IL_6JQ5_005 | 6JQ5 | 0.0000 | 2 | Multiple bulged bases | B | RNA (82-MER) | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
| 3 | IL_6JQ5_002 | 6JQ5 | 0.0600 | 2 | Multiple bulged bases | A | RNA (82-MER) | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
| 4 | IL_4V9F_045 | 4V9F | 0.8294 | 2 | Bulged stacked bases | 0 | LSU rRNA | G | 1269 | U | 1270 | * | A | 1286 | C | 1289 | cWW | cWW |
| 5 | IL_1KXK_001 | 1KXK | 0.8467 | 2 | A | ai5g group II Self-splicing intron | G | 61 | G | 62 | * | U | 8 | C | 11 | cWW | cWW | |
| 6 | IL_5XWP_001 | 5XWP | 0.8179 | 2 | Multiple bulged bases | C | RNA (59-MER) | A | 5 | C | 6 | * | G | 22 | U | 25 | cWW | cWW |
| 7 | IL_8C3A_011 | 8C3A | 0.7532 | 2 | 1 | LSU rRNA | G | 176 | C | 177 | * | G | 238 | C | 241 | cWW | cWW | |
| 8 | IL_8C3A_400 | 8C3A | 0.7472 | 2 | Multiple bulged bases | CM | SSU rRNA | A | 298 | A | 299 | * | U | 113 | U | 116 | cWW | cWW |
| 9 | IL_4V88_392 | 4V88 | 0.6752 | 2 | Multiple bulged bases | A6 | SSU rRNA | A | 300 | A | 301 | * | U | 113 | U | 116 | cWW | cWW |
| 10 | IL_5WLH_001 | 5WLH | 0.7275 | 2 | Multiple bulged bases | B | pre-crRNA | A | -23 | G | -22 | * | C | -7 | U | -4 | cWW | cWW |
| 11 | IL_5W1H_001 | 5W1H | 0.7379 | 2 | Multiple bulged bases | B | mature crRNA | A | -23 | G | -22 | * | C | -7 | U | -4 | cWW | cWW |
| 12 | IL_1MJI_003 | 1MJI | 0.9074 | 2 | Multiple bulged bases | D | 5S rRNA fragment | C | 30 | C | 31 | * | G | 51 | G | 54 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUA*UUA | 3 |
| AA*UCGU | 2 |
| AG*CAAU | 2 |
| GU*AAUC | 1 |
| GG*UAUC | 1 |
| AC*GACU | 1 |
| GC*GACC | 1 |
| CC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*U | 3 |
| *AA | 3 |
| *AU | 2 |
| *AC | 2 |
| *CG | 2 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (9)
- (2)
- Bulged stacked bases (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.44 | Max 0.92
Coloring options: