Motif IL_44699.1 Version IL_44699.1 of this group appears in releases 3.20 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3LOA_003 | 3LOA | 0.6940 | 1 | Decoding loop with one bulged A | A+B | RNA (21-mer) + RNA (23-mer) | C | 1407 | A | 1408 | C | 1409 | * | G | 1491 | A | 1493 | G | 1494 | cWW | cWW | |
| 2 | IL_4R4V_012 | 4R4V | 0.0000 | 2 | A | VS ribozyme RNA | G | 724||||7_556 | A | 725||||7_556 | C | 726||||7_556 | * | G | 749||||7_556 | G | 752||||7_556 | C | 753||||7_556 | cWW | cWW | cWW | |
| 3 | IL_4R4V_006 | 4R4V | 0.0000 | 2 | Isolated non-canonical cWW pair | A | VS ribozyme RNA | G | 724 | A | 725 | C | 726 | * | G | 749 | G | 752 | C | 753 | cWW | cWW | cWW |
| 4 | IL_5TBW_103 | 5TBW | 0.3533 | 0 | Isolated non-canonical cWW pair | 1 | LSU rRNA | G | 2863 | A | 2864 | U | 2865 | * | G | 2824 | C | 2825 | U | 2826 | cWW | cWWa | cWW |
| 5 | IL_5J7L_282 | 5J7L | 0.6083 | 1 | Isolated non-canonical cWW pair | DA | LSU rRNA | C | 1121 | G | 1122 | C | 1123 | * | G | 1031 | A | 1032 | G | 1034 | cWW | cWW | cWW |
| 6 | IL_4Y4O_218 | 4Y4O | 0.6087 | 1 | Isolated non-canonical cWW pair (H) | 2A | LSU rRNA | C | 1121 | G | 1122 | C | 1123 | * | G | 1031 | A | 1032 | G | 1034 | cWW | cWW | cWW |
| 7 | IL_4IOA_037 | 4IOA | 0.6234 | 1 | Isolated non-canonical cWW pair (H) | X | LSU rRNA | C | 1132 | G | 1133 | C | 1134 | * | G | 1042 | A | 1043 | G | 1045 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGC*GAUG | 3 |
| GAC*GCAGC | 2 |
| CAC*GAAG | 1 |
| GAU*GCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AU | 3 |
| A*CAG | 2 |
| A*AA | 1 |
| A*C | 1 |
Release history
| Release | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (3)
- Isolated non-canonical cWW pair (H) (2)
- Decoding loop with one bulged A (1)
- (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.48 | Max 0.93
Coloring options: