Motif IL_45433.1 Version IL_45433.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2O3Y_003 | 2O3Y | 0.5670 | 1 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | A | 18 | G | 19 | cWW | cWS | cWW | ||
| 2 | IL_2OE8_002 | 2OE8 | 0.5377 | 1 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | A | 1493 | G | 1494 | cWW | cWS | cWW | ||
| 3 | IL_2OE5_002 | 2OE5 | 0.5368 | 1 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | A | 1493 | G | 1494 | cWW | cWS | cWW | ||
| 4 | IL_5J7L_327 | 5J7L | 0.0000 | 0 | Other IL | DA | LSU rRNA | A | 2183 | A | 2184 | U | 2185 | G | 2186 | * | C | 2103 | C | 2104 | U | 2105 | U | 2106 | ncWW | ntSH | ncWW | cWW |
| 5 | IL_5UNE_005 | 5UNE | 0.3788 | 0 | tSH-tHW | B+A | RNA (47-MER) | G | 21 | C | 22 | A | 23 | C | 24 | * | G | 21 | C | 22 | A | 23 | C | 24 | cWW | ntWH | ncWS | cWW |
| 6 | IL_4WF9_110 | 4WF9 | 0.4700 | 0 | Tandem non-canonical cWW pairs | Y | 5S rRNA | G | 5 | U | 6 | G | 7 | A | 8 | * | U | 107 | G | 108 | C | 109 | C | 110 | cWW | ncWW | cWW | |
| 7 | IL_7LYF_001 | 7LYF | 0.5614 | 1 | Isolated cWH basepair with non-canonical cWW | A | tRNA | A | 90 | G | 91 | U | 93 | C | 94 | * | G | 39 | U | 40 | C | 41 | U | 42 | cWW | ncHW | ncWw | cWW |
| 8 | IL_4WF9_085 | 4WF9 | 0.4884 | 1 | Tandem non-canonical cWW pairs | X | LSU rRNA | G | 2245 | U | 2246 | G | 2247 | G | 2248 | * | C | 2229 | C | 2231 | A | 2232 | C | 2233 | cWW | ncWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCU*AAAAG | 3 |
| AAUG*CCUU | 1 |
| GCAC*GCAC | 1 |
| GUGA*UGCC | 1 |
| AGUUC*GUCU | 1 |
| GUGG*CGCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*AAA | 3 |
| AU*CU | 1 |
| CA*CA | 1 |
| UG*GC | 1 |
| GUU*UC | 1 |
| UG*GCA | 1 |
- Annotations
-
- (3)
- Tandem non-canonical cWW pairs (2)
- Other IL (1)
- tSH-tHW (1)
- Isolated cWH basepair with non-canonical cWW (1)
- Basepair signature
- cWW-L-R-L-R-cWW
- Heat map statistics
- Min 0.04 | Avg 0.45 | Max 0.77
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