Motif IL_45841.1 Version IL_45841.1 of this group appears in releases 3.91 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 6-9 | 6-12 | 7-8 | 7-11 | 8-10 | 9-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8C3A_144 | 8C3A | 0.0000 | 0 | Minor groove platform related | 3 | 5S rRNA | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | cWW | ncSW | cWW | ncSH | ncSH | |
| 2 | IL_8P9A_365 | 8P9A | 0.0795 | 0 | Minor groove platform related (H) | AS | 5S rRNA | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | cWW | ncSW | cWW | ncSW | ncSH | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAGCA*UUAAGC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGC*UAAG | 2 |
- Annotations
-
- Minor groove platform related (1)
- Minor groove platform related (H) (1)
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: