IL_8C3A_144

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAGCA*UUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Minor groove platform related

Broad Annotation

No text annotation

Motif group

IL_45841.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8C3A|1|3|G|21
8C3A|1|3|A|22
8C3A|1|3|A|23
8C3A|1|3|A|24
8C3A|1|3|G|25
8C3A|1|3|C|26
8C3A|1|3|A|27
*
8C3A|1|3|U|53
8C3A|1|3|U|54
8C3A|1|3|A|55
8C3A|1|3|A|56
8C3A|1|3|G|57
8C3A|1|3|C|58

Current chains

Chain 3

5S

Nearby chains

Chain m

Uncharacterized protein CaJ7.0206

Chain s

60S ribosomal protein L11-B