Motif IL_46691.1 Version IL_46691.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 8-9 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3NPQ_004 | 3NPQ | 0.9014 | 2 | A | S-ADENOSYLHOMOCYSTEINE RIBOSWITCH | G | 7 | G | 8 | A | 9 | G | 10 | C | 11 | G | 12 | C | 13 | C | 16 | * | G | 31 | C | 32 | cWW | cWW |
2 | IL_7JRS_008 | 7JRS | 0.0000 | 0 | A | RNA 3D nanocage | G | 104 | G | 105 | C | 106 | G | 107 | U | 108 | C | 109 | C | 110 | C | 111 | * | G | 28 | C | 29 | ncWW | cWW |
3 | IL_7JRS_005 | 7JRS | 0.1626 | 0 | B | RNA 3D nanocage | A | 39 | G | 40 | C | 41 | C | 42 | U | 43 | G | 44 | C | 45 | C | 46 | * | G | 93 | U | 94 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGAGCGCUGC*GC | 1 |
GGCGUCCC*GC | 1 |
AGCCUGCC*GU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAGCGCUG* | 1 |
GCGUCC* | 1 |
GCCUGC* | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-L-L-R-L-R
- Heat map statistics
- Min 0.16 | Avg 0.44 | Max 0.92
Coloring options: