#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-63-44-5
1 IL_4KQY_0034KQY0.17540Major groove platform with extra pairA SAM-I riboswitchC45A46A47C48*G77U78G79cWWntSHcSHcWW
2 IL_5FJC_0035FJC0.00000Major groove platform with extra pairA SAM-I riboswitchC44A45A46C47*G56U57G58cWWtSHcSHcWW
3 IL_4OQU_0014OQU0.06660Major groove platform with extra pairASAM-I/IV riboswitchC24A25A26C27*G46U47G48cWWtSHcSHcWW
4 IL_4AOB_0034AOB0.10070Major groove platform with extra pairA SAM-I riboswitchC44A45A46C47*G56U57G58cWWtSHncSHcWW
5 IL_3V7E_0033V7E0.11910Major groove platform with extra pairC SAM-I riboswitchC44A45A46C47*G88U89G90cWWtSHncSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAC*GUG5
Non-Watson-Crick part of the motif
SequenceCounts
AA*U5

Release history

Release3.803.813.823.833.843.853.863.873.88
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-11
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform with extra pair (5)
  • Basepair signature
    cWW-tSH-cSH-cWW
    Heat map statistics
    Min 0.07 | Avg 0.11 | Max 0.22
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