Motif IL_47263.2 Version IL_47263.2 of this group appears in releases 3.80 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4KQY_003 | 4KQY | 0.1754 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 45 | A | 46 | A | 47 | C | 48 | * | G | 77 | U | 78 | G | 79 | cWW | ntSH | cSH | cWW |
2 | IL_5FJC_003 | 5FJC | 0.0000 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | cSH | cWW |
3 | IL_4OQU_001 | 4OQU | 0.0666 | 0 | Major groove platform with extra pair | A | SAM-I/IV riboswitch | C | 24 | A | 25 | A | 26 | C | 27 | * | G | 46 | U | 47 | G | 48 | cWW | tSH | cSH | cWW |
4 | IL_4AOB_003 | 4AOB | 0.1007 | 0 | Major groove platform with extra pair | A | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 56 | U | 57 | G | 58 | cWW | tSH | ncSH | cWW |
5 | IL_3V7E_003 | 3V7E | 0.1191 | 0 | Major groove platform with extra pair | C | SAM-I riboswitch | C | 44 | A | 45 | A | 46 | C | 47 | * | G | 88 | U | 89 | G | 90 | cWW | tSH | ncSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAAC*GUG | 5 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AA*U | 5 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with extra pair (5)
- Basepair signature
- cWW-tSH-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.11 | Max 0.22
Coloring options: