Motif IL_48100.1 Version IL_48100.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-3 | 1-5 | 3-4 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1XJR_004 | 1XJR | 0.7280 | 1 | 180 degree turn | A | s2m RNA | G | 28 | A | 29 | C | 31 | * | G | 19 | C | 20 | ncsS | cWW | cWW | ncsS |
| 2 | IL_5J7L_015 | 5J7L | 0.7554 | 1 | AA | SSU rRNA | U | 249 | A | 250 | U | 252 | * | A | 274 | G | 275 | cWW | cWW | |||
| 3 | IL_4LFB_012 | 4LFB | 0.3953 | 1 | A | SSU rRNA | U | 249 | A | 250 | U | 252 | * | A | 274 | G | 275 | cWW | cWW | |||
| 4 | IL_4V9F_016 | 4V9F | 0.3574 | 1 | 0 | LSU rRNA | A | 602 | A | 603 | C | 605 | * | G | 554 | U | 555 | cWW | cWW | |||
| 5 | IL_5Y58_001 | 5Y58 | 0.2239 | 1 | X | TLC1 | U | 291 | A | 292 | A | 294 | * | U | 308 | G | 309 | cWW | cWW | |||
| 6 | IL_4V88_403 | 4V88 | 0.0000 | 3 | A6 | SSU rRNA | U | 318 | U | 319 | A | 323 | * | U | 345 | G | 346 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGU*AG | 2 |
| GAUC*GC | 1 |
| AAGC*GU | 1 |
| UAUA*UG | 1 |
| UUUCGA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AG* | 3 |
| AU* | 2 |
| UUCG* | 1 |
- Annotations
-
- (5)
- 180 degree turn (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.21 | Avg 0.39 | Max 0.76
Coloring options: