Motif IL_48444.1 Version IL_48444.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_7A0S_058 | 7A0S | 0.5123 | 2 | X | LSU rRNA | C | 1514 | U | 1515 | A | 1516 | C | 1517 | * | G | 1503 | G | 1504 | U | 1505 | G | 1508 | ncWW | cWW | cWW |
2 | IL_1L9A_001 | 1L9A | 0.0000 | 1 | B | signal recognition particle RNA S domain | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | A | 234 | cWW | ncWw | cWW |
3 | IL_1MFQ_001 | 1MFQ | 0.2745 | 1 | A | SRP RNA | C | 230 | A | 231 | U | 233 | A | 234 | * | U | 117 | A | 118 | A | 119 | G | 120 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUAC*GGUCAG | 1 |
UAAG*CAGUA | 1 |
CAGUA*UAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UA*GUCA | 1 |
AA*AGU | 1 |
AGU*AA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-cWW-cWW
- Heat map statistics
- Min 0.27 | Avg 0.29 | Max 0.53
Coloring options: