Motif IL_48444.4 Version IL_48444.4 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_362 | 5J7L | 0.8126 | 2 | AA | SSU rRNA | A | 1204 | U | 1205 | G | 1206 | 2MG | 1207 | * | C | 1051 | G | 1052 | G | 1053 | U | 1056 | cWW | cWw | cWW | |
| 2 | IL_1L9A_001 | 1L9A | 0.0000 | 1 | B | signal recognition particle RNA S domain | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | A | 234 | cWW | ncWw | cWW | |
| 3 | IL_1MFQ_001 | 1MFQ | 0.2745 | 1 | A | SRP RNA | U | 117 | A | 118 | A | 119 | G | 120 | * | C | 230 | A | 231 | G | 232 | A | 234 | cWW | cWW | ||
| 4 | IL_7A0S_058 | 7A0S | 0.5123 | 2 | X | LSU rRNA | C | 1514 | U | 1515 | A | 1516 | C | 1517 | * | G | 1503 | G | 1504 | U | 1505 | G | 1508 | ncWW | cWW | cWW | |
| 5 | IL_8P9A_455 | 8P9A | 0.7954 | 1 | Non canonical cWW and near pair (H) | sR | SSU rRNA | C | 1644 | G | 1645 | C | 1646 | U | 1647 | * | A | 1753 | A | 1754 | A | 1755 | G | 1757 | cWW | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*CAGUA | 2 |
| AUG(2MG)*CGGCAU | 1 |
| CUAC*GGUCAG | 1 |
| CGCU*AAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AGU | 2 |
| UG*GGCA | 1 |
| UA*GUCA | 1 |
| GC*AAA | 1 |
- Annotations
-
- (4)
- Non canonical cWW and near pair (H) (1)
- Basepair signature
- cWW-L-R-cWW-cWW
- Heat map statistics
- Min 0.27 | Avg 0.56 | Max 0.94
Coloring options: